Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05222 ATGAGTTCCAATTCTAAACAAAACCAGCTTCCTATAGATCAAGAAACAGAGGTTGATGAAGCTTACCTCACTGCTCTGTTTCTAAGCTTCAGCAGGGTATTTCCTTCAATTCTTAATGCTGCTGTTGATCTCAATTTGTTTGAGATAATAGCTAAGGCACAAAGTTCATGTGGTGGTTCATCCTTGTCTGCCTCTGAGATTGCTTCTCAATTTCCAAACCAACACTCAGAATTGGCAAAAAGGCTTGAACGCATGTTGCCTGTGTTGGCTAGTTATTCTCTTCTAACTTGCTCCATTCGCACCAATGAAGATGGTAAAAGAGAAAGAGTTTATGCTCTCTCTCCCGTTGGTCAATACTATGTATTTGACAATGATGGAGGCTCTTTGGGTCCATTCGCAACTTTAATCCACAGAGGATTTCAACAAGTTTGGAATGATGTCAAGGATGCAATTGTTGACCCTGAGAACAATAACCATTTCCAAAATGTTCATGGATTGCTGCCTTTTCAATATATGGAGAAAGATAAAGAGCAGAATCAAATATTTAACAATGCAATGGCTCATAATGGCCCATTAGAAATGAAAATGATCCTTAAACTATATAAAGGATTTGAGGGAGTATCAACACTCGTTGATGTAGGAGGTGGAGTAGGCCGGGTACTAAAACAAATTATCTCTAAGTATCCTTCTGTAAAAGGAATTAATTTTGATTTACCTCAAGTGATTCAAGATGCATCACCTCTTCCAGGGATTGAGCATGTTGGAGGAAGCATGTTTGAAAGTGTTCCAAATGGTGATGCCATCTTACTAAAGCGTGTATGCCATAATTGGTCAGATGAAGAATGTGTGAAGTTTCTAAGAAATTGTCACAAAGCTTTGCCAAAATATGGGAAGGTGATTGTTGTGGACTGTATAGTTCCAGAAGTTCCAAACCCAAGCATTAGCTCTAAGCTTGCTTGTGATGTTGACAATGTCATGTTTTTAATACATGGAGGAAAGGAAAGGACTGAGAATGAATTTCAAAGCTTATGCATGAGCTCTGGATTTTCCAAATTTCATGTTGCTTGCAGGGGTTTCTCAGCTATATTAGGAGTGATGGAATTTTATAAATAA 1113 0.3819 MSSNSKQNQLPIDQETEVDEAYLTALFLSFSRVFPSILNAAVDLNLFEIIAKAQSSCGGSSLSASEIASQFPNQHSELAKRLERMLPVLASYSLLTCSIRTNEDGKRERVYALSPVGQYYVFDNDGGSLGPFATLIHRGFQQVWNDVKDAIVDPENNNHFQNVHGLLPFQYMEKDKEQNQIFNNAMAHNGPLEMKMILKLYKGFEGVSTLVDVGGGVGRVLKQIISKYPSVKGINFDLPQVIQDASPLPGIEHVGGSMFESVPNGDAILLKRVCHNWSDEECVKFLRNCHKALPKYGKVIVVDCIVPEVPNPSISSKLACDVDNVMFLIHGGKERTENEFQSLCMSSGFSKFHVACRGFSAILGVMEFYK. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05222 370 Pfam Dimerisation domain 37 90 IPR012967 GO:0046983
Seca10g05222 370 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 370 IPR016461 GO:0008168
Seca10g05222 370 FunFam Caffeic acid 3-O-methyltransferase 2 120 - -
Seca10g05222 370 FunFam Uncharacterized protein 122 370 - -
Seca10g05222 370 PIRSF O-mtase 2 370 IPR016461 GO:0008168
Seca10g05222 370 SUPERFAMILY "Winged helix" DNA-binding domain 17 124 IPR036390 -
Seca10g05222 370 Gene3D Vaccinia Virus protein VP39 179 357 IPR029063 -
Seca10g05222 370 Pfam O-methyltransferase domain 144 350 IPR001077 GO:0008171
Seca10g05222 370 Gene3D - 33 197 IPR036388 -
Seca10g05222 370 PANTHER O-METHYLTRANSFERASE 28 359 IPR016461 GO:0008168
Seca10g05222 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 135 358 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05222 Seca-Chr10 119440662 119443478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05222 1 359 Monolignol Biosynthesis Gene Families AT5G54160 47.238 6.53e-111 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05222 - - aprc:113869089 518.464