Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05185 ATGGAATTGTCAATAGCTGTTAATAATTCTCTGATTGCACTGGCACGACGTGGAATTTTTTGCACAGAACCTTTTCGAGTACCATTTGCTGGGAAGGTTGATATATGTTGTTTTGACAAGACAGGGACACTTACATCTGATGACATGGAGTTTTCAGGAGTTGTTTGGTTGTCAGGAACTACTGATTTGGAATCTGATATGAGTAGAGTATCTGTGCGAACATTAGAAATCCTGGCTTCTTGCCATGCATTGGTATTTGTTCAGAATAAGCTGATTGGTGATCCTCTTGAGAAGGCTGCCCTTAAGGGAATTGACTGGAGTTATAAATCTGATGAGAAGTCTGTTCCAAAAAAGGGAAATGCCCATCCTGTCCAAATTGTTCAGCGGTACCATTTTTCATCTCACTTAAAACGAATGACAGTTGTTGTACGGATTGAGGAGGAATTTTTTGCCTTTGTGAAGGGTGCACCAGAAATTATACAAGAAAGACTCACTGATATACCACCTTCATATGTTGAGACCTACAAAAAATATACACGTCAAGGATCTCGTGTTCTTGCTCTGGCATACAAGTCTCTTCCTGACATGACAGTCAGTGAAGCTAGAAGCTTGGATAGGGATATAGCGGAGAGTGGACTTACTTTTGCAGGTTTTGCGGTATTTAATTGTCCCATCAGATCAGATTCAGGCACTGTATTATTTGAATTGAAAGGATCTTCGCATGATTTGGTGATGATTACTGGTGACCAAGCTTTGACAGCTTGCCATGTTGCTAGCCAAGTTCATATCATATCAAAACCTACATTAATCCTTTCCCCAGCAAGAAATGGTGAAGGATACAATTGGGTATCCCCTGATGAGACTGAAACCATTTGCTACAGTGAGAAAAAGGTTCAATCTTTGGCAGAGACTCATGATCTGTGTGTTGGAGGTGATTGCATTGAGATGTTGCAACAGTCATCAGCTCATCTTCTAGTCATTCCTCATGTGAAGGTTTTTGCTAGAGTTTCTCCTGAGCATAAAGAACTAATCATGACCACTTTCAAAACATTGGGACGGGTAACTTTGATGTGTGGGGACGGAACCAATGATGTTGGAGCTTTGAAGCAGGCCCATGTAGGAGTTGCTCTTCTGAATGTAATGCTTCCAACCCAAAGTGGAAACTCCTCTTCAGATTCATCTGGGGAAGAACGTTCAAAATCTGTCAAGCAAAAGAAATCTAGGCCTGCACTGGAAACATCTGGAAAGACAGTTAGCACAATTGGAGAAGTCACTTCAAAAGCCAAAGATGCTTCAAGATCAGATTCAACCCGCCATTCATCTGTTAACCGTGTTGAGATACAACAACAGAAGCTGAAGAAGATGATTGATGAGCTTAATGAGGAAGGAGATGGTGGTGCTCCTATTGTCAAGCTTGGTGATGCCTCAATGGCATCTCCATTCACCGCAAAGGATGCATCTGTTGTTCCAACCACTGACATAATTCGTCAAGGTCGGAGTACCTTAGTGACAACCCTCCAGATGTTTAAAATTCTTGGCCTCAATTGCCTTGCTACTGCATATGTGTTGAGTGTTATGTATCTGGATGGTGTCAAGCTAGGAGATTTACAAGCCACAATAAGGGATATGTTTACTGCTGCATTTTTCTTCTTTATATCAAATCCACGCCCTCTTCCCACTCTCTCAGCTGAACGCCCTCACCCTAACATTTTTTGTGCTTATGTCTTCCTTTCACTCTTGGGACAGTTTTCTATTCATCTGTTTTTTCTGATATCATCTGTTAGAGAAGCTGGAAAATACATGCCAGATGAATGCATTGAACCAGATTCAGATTTTCATCCCAACCTGGTAAATACAGTTTCCTACATGGTTAGCATGATTATTCAGGTGGCAACATTTGCTGTGAACTATATGGGCCATCCCTTTAACCAGAGTATTCCTGAAAACAAACCGTTCTTGTATGCCCTTGTTGCTGCTGTTGGTTTCTTCACTGTTATCACATCTGATCTCTTCAGGGACTTGAATGACTGGTTGAAGTTGGTGTCATTGCCTCCAGGTTTGAGGGATAAACTATTGATTTGGGCGTTTCTTATGTTTTCTGTATGCTATTCATGGGAGAGGTTTTTGAGGTGGACCTTCCCCGGTAATGCTAAGATCCCAGTTTGGAAGGACCCTCAACAAGTTGCTCTATGTAATTTAGAAAAGAAAAAATGGCTCTAA 2220 0.414 MELSIAVNNSLIALARRGIFCTEPFRVPFAGKVDICCFDKTGTLTSDDMEFSGVVWLSGTTDLESDMSRVSVRTLEILASCHALVFVQNKLIGDPLEKAALKGIDWSYKSDEKSVPKKGNAHPVQIVQRYHFSSHLKRMTVVVRIEEEFFAFVKGAPEIIQERLTDIPPSYVETYKKYTRQGSRVLALAYKSLPDMTVSEARSLDRDIAESGLTFAGFAVFNCPIRSDSGTVLFELKGSSHDLVMITGDQALTACHVASQVHIISKPTLILSPARNGEGYNWVSPDETETICYSEKKVQSLAETHDLCVGGDCIEMLQQSSAHLLVIPHVKVFARVSPEHKELIMTTFKTLGRVTLMCGDGTNDVGALKQAHVGVALLNVMLPTQSGNSSSDSSGEERSKSVKQKKSRPALETSGKTVSTIGEVTSKAKDASRSDSTRHSSVNRVEIQQQKLKKMIDELNEEGDGGAPIVKLGDASMASPFTAKDASVVPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDLQATIRDMFTAAFFFFISNPRPLPTLSAERPHPNIFCAYVFLSLLGQFSIHLFFLISSVREAGKYMPDECIEPDSDFHPNLVNTVSYMVSMIIQVATFAVNYMGHPFNQSIPENKPFLYALVAAVGFFTVITSDLFRDLNDWLKLVSLPPGLRDKLLIWAFLMFSVCYSWERFLRWTFPGNAKIPVWKDPQQVALCNLEKKKWL. 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05185 739 FunFam Cation-transporting ATPase 218 393 - -
Seca10g05185 739 FunFam Cation-transporting ATPase 33 217 - -
Seca10g05185 739 MobiDBLite consensus disorder prediction 411 427 - -
Seca10g05185 739 Pfam Cation transport ATPase (P-type) 88 166 - -
Seca10g05185 739 SFLD Haloacid Dehalogenase 18 500 - -
Seca10g05185 739 SFLD p-type atpase 18 500 IPR044492 -
Seca10g05185 739 Coils Coil 442 462 - -
Seca10g05185 739 NCBIfam P-type ATPase of unknown pump specificity (type V) 1 694 IPR006544 GO:0006812|GO:0016020|GO:0019829|GO:0140358
Seca10g05185 739 SUPERFAMILY Calcium ATPase, transmembrane domain M 3 714 IPR023298 -
Seca10g05185 739 PANTHER CATION-TRANSPORTING ATPASE-RELATED 1 713 IPR006544 GO:0006812|GO:0016020|GO:0019829|GO:0140358
Seca10g05185 739 ProSitePatterns E1-E2 ATPases phosphorylation site. 39 45 IPR018303 -
Seca10g05185 739 MobiDBLite consensus disorder prediction 396 410 - -
Seca10g05185 739 Gene3D - 218 394 IPR023214 -
Seca10g05185 739 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 43 227 IPR023299 GO:0000166
Seca10g05185 739 SUPERFAMILY HAD-like 32 379 IPR036412 -
Seca10g05185 739 NCBIfam HAD-IC family P-type ATPase 329 378 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca10g05185 739 MobiDBLite consensus disorder prediction 385 443 - -
Seca10g05185 739 Gene3D - 32 217 IPR023299 GO:0000166
Seca10g05185 739 PRINTS P-type cation-transporting ATPase superfamily signature 37 51 - -
Seca10g05185 739 PRINTS P-type cation-transporting ATPase superfamily signature 358 377 - -
Seca10g05185 739 PRINTS P-type cation-transporting ATPase superfamily signature 239 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05185 Seca-Chr10 118555249 118568781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05185 1 737 Primary Pumps ATPases AT5G23630 72.801 0.0 1093
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05185 K14950 - gmx:100789385 1240.33