Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05183 ATGTATTATAACAGCACACACTTATGTACAATAGCACAAGTACTTTTTGTATGTTTATGTTTTTTGTTTTTGTTTGTATGCTTATTGTTTGATCCTCATATTTCAGGTATATGCAAAATTGTTTCTCCAATTGCTGCTTCTAATCCAGCTTCTTTTGTCTTAATGAAAGAGAAAAAAGACTTCAAGTTTGAAACAAATGTACAGCCTCTTCGGCTTGCTAAATGGAATGAGAATGATATAATAACTTTTTCTATAAGAGGCAGAAAATATACATATCATGAATTTAAGGCTCTGGCAAACAAGGCATTTTTCAGAAGATTTTGCAGTTCTGAAGGTCTTTCTTCTTCATATGTGGAAAAGGAGTTCTGGTATGAGATGGCGCATGGAGAAAAGGGAACAATTGAGTATGGAGTCAATGTTGAGGGTACTGCCTTTTCATGTGATCCAAATGACAGGCTTGGAACAAGCAAATGGAATTTGAAGAATTTCTCACGGCTGCTGCAGTCCCCTTTGCGTTTAGTTGACAGGGAAATTCCAGGGGTAACTGATCCTATGCTTTACATTGGGATGTTGTTCAGTATGTTTGCATGGCATGTAGAAGATCACTATTTGTATAGCATAAATTATCATCACACTGGTGCTAATAAAACTTGGTATGGTGTGCCTGGCTATGCAGCCTCTCAATTTGAAAAGACTGTCTTAAATCATGTGTATTGCAATAAGATTTTAGAAAAACATGGAGAGGATGGAGCCTTCAAATTTCTTGCATATAAAACAACCATGTTCCCTCCAAGTGTTTTGTTGCAACATGATGTGGCAGTTTACAAGGCTGTGCAGAAGCCAGGAGAGTTTGTGATCACCTTTCCTAGAGCTAGCATATCATGCTGGATTTAG 894 0.3714 MYYNSTHLCTIAQVLFVCLCFLFLFVCLLFDPHISGICKIVSPIAASNPASFVLMKEKKDFKFETNVQPLRLAKWNENDIITFSIRGRKYTYHEFKALANKAFFRRFCSSEGLSSSYVEKEFWYEMAHGEKGTIEYGVNVEGTAFSCDPNDRLGTSKWNLKNFSRLLQSPLRLVDREIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHTGANKTWYGVPGYAASQFEKTVLNHVYCNKILEKHGEDGAFKFLAYKTTMFPPSVLLQHDVAVYKAVQKPGEFVITFPRASISCWI. 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05183 297 SMART cupin_9 152 295 IPR003347 -
Seca10g05183 297 ProSiteProfiles JmjC domain profile. 152 297 IPR003347 -
Seca10g05183 297 Pfam JmjC domain, hydroxylase 185 291 IPR003347 -
Seca10g05183 297 PANTHER LYSINE-SPECIFIC DEMETHYLASE 35 291 - -
Seca10g05183 297 SUPERFAMILY Clavaminate synthase-like 157 290 - -
Seca10g05183 297 Gene3D Cupin 30 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05183 Seca-Chr10 118518474 118519801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05183 87 291 JUMONJI Transcription Factor Family AT2G34880 38.393 1.82e-35 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca10g05183 JmjC 2.8e-30 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05183 - - gmx:100809650 483.026