Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05181 ATGGGACGTGGAAAGATAGAGATAAAGAGGATTGAGAACACAACGACAAGGCAAGTGACATTCTCGAAGAGAAGAACAGGACTAATCAAGAAGACTCATGAGCTTTCTGTGCTCTGTGATGCTCAGATCGGACTCATCATCTTCTCCACTACTGGCAAGATGTTCCAGTACTGCAGTGAACCCTTTAGGATGGAGCAGATCATAGAAAAGTATCAGAGAGCTACAGGAGCTCGCATGATTGATCGTGATCACCCCAGGGTATATGTATATGATGAATTGTTCCGTGACATGGCAATGCTGAGGCAGGAAACGCTTCGACTTGAATTGGGGATTCAACGGTATCTTGGAGAGGACATGAGCTGTTTACAGTATGAGGATTTGACTAAGCTTGAACAAGAATTGGAGAACTCTGTTGCAAAAGTTCGAAACCGTCAGAATGAGCTCTTGCAACAGCAAATGGAGAATCTGCGAAGGAAGGAAAGAATCTTGGAAGATGAAAACAGCAATTTGTCCAATTGGGAGCAGCGGGCAGTGTTGGAGTTTCAGAAGGCAGCAGTGGAAGCAAATAACAAAGCAATGGATCATCACTTTCCATTCTTTGAAGAGCAACCTATCCTTCAACTTGCAGCCCCTGTTCTTCCTCAACTTCACCCTTATCTTCAGCTGGCTCAGCCCAATATCCATCATGACCCTACTCTCACCCCTGACCCTTGA 714 0.451 MGRGKIEIKRIENTTTRQVTFSKRRTGLIKKTHELSVLCDAQIGLIIFSTTGKMFQYCSEPFRMEQIIEKYQRATGARMIDRDHPRVYVYDELFRDMAMLRQETLRLELGIQRYLGEDMSCLQYEDLTKLEQELENSVAKVRNRQNELLQQQMENLRRKERILEDENSNLSNWEQRAVLEFQKAAVEANNKAMDHHFPFFEEQPILQLAAPVLPQLHPYLQLAQPNIHHDPTLTPDP. 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05181 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca10g05181 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca10g05181 237 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Seca10g05181 237 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Seca10g05181 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca10g05181 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca10g05181 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca10g05181 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca10g05181 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca10g05181 237 ProSiteProfiles K-box domain profile. 90 184 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca10g05181 237 Coils Coil 124 176 - -
Seca10g05181 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Seca10g05181 237 Gene3D - 14 87 IPR036879 GO:0003677|GO:0046983
Seca10g05181 237 Pfam K-box region 91 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05181 Seca-Chr10 118457778 118461124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05181 1 236 MADS-box Gene Family AT5G23260 46.743 1.14e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca10g05181 K-box 3.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05181 - - gmx:100783876 311.612