Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05177 ATGAATCATCTGGTGAAGACCACTGGGGTGCAGCTTCCTGTTGTTGTAGTTCAGTATGCCAAAGTGAAAAAATTTAGAGGCATTGTGGTCCCGCAGAATGTTCTGAACACGACACGAATCCTCTGGAACCCTGAAATTGCGCTCGCCGTTGACTTTAAGAACAGCATAATTTCCAAATGCATAGATATTGAAGGACCAATTGGCCTAATTGAGGAACACGTTGGTAGTGCATCAGCAGATGAAGAGTTCCTGCACATGTTCCCAAGGAAAACTATAAGTGAATTGCATGCGACGGAAGAGGATGGCTATTTCATCGTGTTGGCAACCATAATTGCTATTCTCAATGATACTCAGTGGTGGTACCTTGCTTGCAAGTGCAATAGGGCTGTATCAGTTGATGGGGAGAATTACTATTGTTCATTTTGCGAATCAAATGTCAACGAAATTACTAAAAGGTACAAGTTAAAGGTCGAGGTGTTTGATGGAGAAGACACTGTTGCCTTTGTAATGTTTGACAGCGATGCGGAATTGCTTACGGCCATTCCGTGCTCTGCGCTGTGTGATACTTTTAAGGATGCTGAAGGTGATCATCTCCCACCGCAGCTGGACGAGTTGGGGGGTAGGGAGCTTCTTTTTAAGGTGGAGAAGGGTGATGATTATGCGTTTAAGTATGACGACACCTTTAAGGTTAAGGGGGTTTGTATAGTTGAAGAAATATTAGAACATTTCAAAGAAATGAAGAAAATTTCCACTCCAAAATCAAAAAAATTCGTGGTCCCATTCCCAAGCTTGGATGACATAGCTGAGGAAGATGGCATTTGTAATCGCAGTGCACATGACTCTGATGTGGTAGATGTTGCAACTGAGGCGCCTTTTAATGTGGATGATTACCTATCTGACCAAGCCGGGTTTCCGATCATATCTGGAGGGGCAGCTGGGGATGAGGCAGGTGGGAGTGGCGTTGTCAAGGTTGGCACGAGTGGGAAGGGTGTAGATGCCCAACCAAAATAA 1011 0.4441 MNHLVKTTGVQLPVVVVQYAKVKKFRGIVVPQNVLNTTRILWNPEIALAVDFKNSIISKCIDIEGPIGLIEEHVGSASADEEFLHMFPRKTISELHATEEDGYFIVLATIIAILNDTQWWYLACKCNRAVSVDGENYYCSFCESNVNEITKRYKLKVEVFDGEDTVAFVMFDSDAELLTAIPCSALCDTFKDAEGDHLPPQLDELGGRELLFKVEKGDDYAFKYDDTFKVKGVCIVEEILEHFKEMKKISTPKSKKFVVPFPSLDDIAEEDGICNRSAHDSDVVDVATEAPFNVDDYLSDQAGFPIISGGAAGDEAGGSGVVKVGTSGKGVDAQPK. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05177 336 Gene3D - 76 248 IPR012340 -
Seca10g05177 336 CDD RPA1_DBD_C 90 233 IPR047192 -
Seca10g05177 336 PANTHER OS03G0429900 PROTEIN 90 254 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca10g05177 336 Pfam Replication factor-A C terminal domain 103 234 IPR013955 -
Seca10g05177 336 SUPERFAMILY Nucleic acid-binding proteins 87 215 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05177 Seca-Chr10 118373309 118376070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05177 13 256 Core DNA Replication Machinery Family AT5G08020 24.138 1.69e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05177 - - lja:Lj1g3v3385890.1 248.825