Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05171 ATGACGGAGCCACAGGCCGCAACCACAATAACAACAACTCACCAGCAGCAGCGAAACAATGACAATCAAAATATTTTATCCGTCAAGAAACCGCCGTCCAAAGACCGTCACAGCAAAGTGGACGGTCGTGGACGCCGCATTCGGATGCCAATTATATGCGCCGCACGTGTCTTCCAGTTGACACGTGAGCTTGGCCACAAATCCGACGGTCAAACCATCGAGTGGCTCCTCCGTCAGGCGGAGCCATCCATCATCGCCGCCACCGGAACCGGCACCACTCCCGCTTCTTTCTCCACACTCTCCGACCACAAGCCTTTCCTCCCTCCTTCTCCTTTCATCCTCGGAAAACGAATACGCACTGACCACGACGCTCCCAAAGACGACGCCGTTTCACTCGTCGCACCTTCCGCTCCTGCCGCTCTCTGGGCGCTTCCTGCCAGGCCGGACTTCGGCCAGGTCTGGAGCTTCGCCGCCGCTGGAGCACCACCGGAACTCGTTTCGCCGTCGCCGCAACAGCAACAGCATGGTTCGTTGTTTCATCATCAGCAGCATGCCGCCATGGGAGAAGCTTCGGCGGCGAGGCTGGGGAATTACCTGCCAGGACATCTGAATTTGCTGGCTTCGTTGTCCGGCGGCCACGGGAATTCCGGCCGGCGAGACGACGAGCCTCGTTGA 675 0.5896 MTEPQAATTITTTHQQQRNNDNQNILSVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTLSDHKPFLPPSPFILGKRIRTDHDAPKDDAVSLVAPSAPAALWALPARPDFGQVWSFAAAGAPPELVSPSPQQQQHGSLFHHQQHAAMGEASAARLGNYLPGHLNLLASLSGGHGNSGRRDDEPR. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05171 224 MobiDBLite consensus disorder prediction 1 42 - -
Seca10g05171 224 MobiDBLite consensus disorder prediction 166 180 - -
Seca10g05171 224 MobiDBLite consensus disorder prediction 164 185 - -
Seca10g05171 224 MobiDBLite consensus disorder prediction 1 29 - -
Seca10g05171 224 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 14 195 IPR005333 GO:0003700
Seca10g05171 224 Pfam TCP family transcription factor 33 103 IPR017887 -
Seca10g05171 224 ProSiteProfiles TCP domain profile. 33 87 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05171 Seca-Chr10 118284494 118285168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05171 21 224 TCP Transcription Factor Family AT5G23280 65.639 2.08e-87 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca10g05171 TCP 1.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05171 K16221 - gmx:100786264 308.531