Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05158 ATGCATCTCTCTGTGCATAGGCAAATGGCTGGGTCGAAGGAACAGCAGGAGAAGTACATGCCGATGTCGAACGTGGTAAGGATAATGCGAAAGGCTCTTCCAGCGCACGCTAAGATCTCAGATGATGCGAAGGAAACAATGCAAGACTGTGTGTCTGAGTTCATCAGTTTCATTACCGATGAAGCGAATGATCGGTGCAAGCGTGAGCATAGAAAGACAGTGACTCCAGAGGATGTGATTTGGGCATTGGGGAGTCTTGGTTATGATGATTATGTTCAACCTCTCTCCCTTTACCTTCAAAGGTACCGTGAGAGTGAAGGAGTTCCCGCTTATGTTAGGCGCCGCAACCGTGGTCTTCTGAATGTCATGCCTCCTCCTCCTCCTCCTCCACCACCACAACCACCTTCTGGTTTTTATGGTTATTATGGTTATGGTGGACCCATGCTTGACTTTGACCCATCCCAGCAGACACTCACACCAGGGTTCAAGGATGATGCTTCTGCTTCTGTTTCTGCTGTTGCCTCTGCCTCAGCCTCAGCCTCAGCCTCTGGCTCTGGCTCTTCTGTTGCCACCTTTGATTCTTTACGTGATAAAGGTGACCCCATGTGA 609 0.4959 MHLSVHRQMAGSKEQQEKYMPMSNVVRIMRKALPAHAKISDDAKETMQDCVSEFISFITDEANDRCKREHRKTVTPEDVIWALGSLGYDDYVQPLSLYLQRYRESEGVPAYVRRRNRGLLNVMPPPPPPPPPQPPSGFYGYYGYGGPMLDFDPSQQTLTPGFKDDASASVSAVASASASASASGSGSSVATFDSLRDKGDPM. 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05158 202 PRINTS CCAAT-binding transcription factor subunit A signature 47 65 - -
Seca10g05158 202 PRINTS CCAAT-binding transcription factor subunit A signature 66 84 - -
Seca10g05158 202 PRINTS CCAAT-binding transcription factor subunit A signature 85 103 - -
Seca10g05158 202 Gene3D Histone, subunit A 7 118 IPR009072 GO:0046982
Seca10g05158 202 MobiDBLite consensus disorder prediction 173 202 - -
Seca10g05158 202 SUPERFAMILY Histone-fold 16 107 IPR009072 GO:0046982
Seca10g05158 202 MobiDBLite consensus disorder prediction 173 192 - -
Seca10g05158 202 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 163 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca10g05158 202 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 20 83 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05158 Seca-Chr10 117991375 117991983 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05158 15 107 CCAAT-HAP3 Transcription Factor Family AT5G47670 68.817 1.04e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca10g05158 CBFD_NFYB_HMF 4.5e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05158 K08065 - gmx:547959 172.17