Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05157 ATGGCTGGGTTGAGGGAACAGGACCAGTTCATGCCGATAGCGAACGTGATAAGGATCATGAGAAGGATTCTTCCAGCGCACGCTAAGATCTCAGACGATGCAAAGGAAACAATGCAAGACTGTGTGTCTGAGTTCATCAGTTTCATCACCTCTGAAGCCAATGATCGGTGCCAGCGTGAGCAGAGGAAAACAGTTACTGCAGAGGATGTGATTTGGGCAATGGGGAAGCTTGGTTTTGATGATTATATTCAACCTCTCTCCCTTTACCTTCAAAGGTACCGTGAGAGTGAAGGAGAACCCGCTTTTGCTAGGCGCAACCCTGGTCCTCTCAATGTGATGCCTCCTCCTCCACCACCACCACAACCACAACCACAACCACCTTCTGCTGGTTTTTATGGTTATTATGGATTTGGAGTACCCATGATTGACTTTGACCCATCGCAAGGGTTCTACAGGGATGATGCTTCTGCTTCTGCTGTTGCCTCTGCCTCAGCCTCAGGCTCTTCTGTTGCAACCTTTGATTCTTTTCCTCGCCTTAAAGGTGACCCCATGTGA 555 0.4883 MAGLREQDQFMPIANVIRIMRRILPAHAKISDDAKETMQDCVSEFISFITSEANDRCQREQRKTVTAEDVIWAMGKLGFDDYIQPLSLYLQRYRESEGEPAFARRNPGPLNVMPPPPPPPQPQPQPPSAGFYGYYGFGVPMIDFDPSQGFYRDDASASAVASASASGSSVATFDSFPRLKGDPM. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05157 184 FunFam Nuclear transcription factor Y subunit B-6 1 111 - -
Seca10g05157 184 ProSitePatterns NF-YB/HAP3 subunit signature. 41 57 IPR003956 GO:0005634|GO:0006355|GO:0043565
Seca10g05157 184 Gene3D Histone, subunit A 2 107 IPR009072 GO:0046982
Seca10g05157 184 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 10 74 IPR003958 -
Seca10g05157 184 MobiDBLite consensus disorder prediction 99 129 - -
Seca10g05157 184 SUPERFAMILY Histone-fold 7 111 IPR009072 GO:0046982
Seca10g05157 184 MobiDBLite consensus disorder prediction 109 127 - -
Seca10g05157 184 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Seca10g05157 184 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Seca10g05157 184 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Seca10g05157 184 MobiDBLite consensus disorder prediction 162 184 - -
Seca10g05157 184 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 125 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05157 Seca-Chr10 117899550 117900104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05157 4 99 CCAAT-HAP3 Transcription Factor Family AT5G47670 84.375 5.62e-59 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca10g05157 CBFD_NFYB_HMF 1.5e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05157 K08065 - gmx:100811633 228.409