Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05154 ATGTCTTACATGCAAATTTCTCAAAAGTTTTATGATGCTTTCAAGCTCTGTGGCTCCTCCCTCAAATCCCCACCCATTGCTCGCAAACTTCATGCCCAGCTCATTCTCTCCGGTTTGGACGCTTCCATTTTCTTACTCAACAATCTACTGCACATGTACTCCAATTGTGGCTTGATAGACGATGCTTTTCAGGTTTTCTGCGAGGCCAATCATCGCAATAACTTCACTTGGAACACAATGATTCATGCCTTAGTTGATTCAGGCCGAATCAAAGAAGCAGAGAACTTGTTCGATGAAATGCCTATGAGAGTGAGAGACTCTGTTTCTTGGACCACCATGATGTCCGGGTATTGTCAAAATGGCCTCCCTGCTCTTAGCATCAAAACTTTTACTTCAATGCTTCGAGACTCTAACTACGACCCCTTTTCCTTTACTTGTGCAATGAAGGCTTGTGGGTGCCTTGCACAGACTCAATTGGCTCTTCAGTTGCATGCCCATGTCATCAAGTTAAATTTTGGAACCCAAACTTGTATTCAGAACTCCCTTGTTGATATGTACATTAAGTGTGGAGCAATCAGTTTGACCGAGGCTGTTTTCTACAACACTGATAGCCCAAGTTTGTTTTGTTGGAACAGTATGATTTATGGTTATTCTCAATCATACGGACCCTATGAAGCTCTCCATATGTTCAACCGAATGCCTGAACGTGATTGTGTTTCTTGGAACATGATGATCTCAGTCTTCTCTCAACATGGCCTTGGGGTCCATTGTCTTAGCATGTTTATAGAGATGTGCAATCAGGGTTTTAGGCCAAATTTCAAGACTTATGGCAGTGTTGCTCACATTCCTGGGGCCCTTTTCTTTGATGTAGATGGAATAGCAGATCGAAATACAAATCTGCCACACATGTTGCCATCAGAGGATGCTTTTGCTGCTGCTGTTTCTGCTCTTGCTAATGCATCTTTCCTCTGTTCACTGATTAAAAGAATGTTCCGAGTGTTTGGGTATGACAGAATTTGGGTATTAGATGGTGGTCTGCCAAGATGGCGTGCATCGGGTTATGATATTGAATCTAGCACTTCAAGTGATGCTATTCTTAAAGCCAGTCCTGCAACTGAGGCAATAGAGAAAGTATATCAGGGACAAGCAGTTGGCTCCCCAATCACATTTCAGACTAAATTTCAGCCACATCTTGTTTGGAGCCTTGATCAGATAAATCTATCAGAAGCAAAGACCTTGGACAATGCAATTGTTGGTTGTGGCATGCTTATCTCTGGCAGCCAAAGTAGTTGA 1293 0.4269 MSYMQISQKFYDAFKLCGSSLKSPPIARKLHAQLILSGLDASIFLLNNLLHMYSNCGLIDDAFQVFCEANHRNNFTWNTMIHALVDSGRIKEAENLFDEMPMRVRDSVSWTTMMSGYCQNGLPALSIKTFTSMLRDSNYDPFSFTCAMKACGCLAQTQLALQLHAHVIKLNFGTQTCIQNSLVDMYIKCGAISLTEAVFYNTDSPSLFCWNSMIYGYSQSYGPYEALHMFNRMPERDCVSWNMMISVFSQHGLGVHCLSMFIEMCNQGFRPNFKTYGSVAHIPGALFFDVDGIADRNTNLPHMLPSEDAFAAAVSALANASFLCSLIKRMFRVFGYDRIWVLDGGLPRWRASGYDIESSTSSDAILKASPATEAIEKVYQGQAVGSPITFQTKFQPHLVWSLDQINLSEAKTLDNAIVGCGMLISGSQSS. 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05154 430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Seca10g05154 430 ProSiteProfiles Rhodanese domain profile. 280 358 IPR001763 -
Seca10g05154 430 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 13 102 IPR046960 GO:0003723|GO:0009451
Seca10g05154 430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 73 103 IPR002885 -
Seca10g05154 430 Gene3D - 322 368 IPR036873 -
Seca10g05154 430 NCBIfam pentatricopeptide repeat 208 239 IPR002885 -
Seca10g05154 430 NCBIfam pentatricopeptide repeat 239 272 IPR002885 -
Seca10g05154 430 NCBIfam pentatricopeptide repeat 75 100 IPR002885 -
Seca10g05154 430 NCBIfam pentatricopeptide repeat 108 136 IPR002885 -
Seca10g05154 430 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 278 359 IPR036873 -
Seca10g05154 430 FunFam Pentatricopeptide repeat-containing protein At3g49710 15 157 - -
Seca10g05154 430 Pfam PPR repeat 108 136 IPR002885 -
Seca10g05154 430 Pfam PPR repeat 239 269 IPR002885 -
Seca10g05154 430 Pfam PPR repeat 75 101 IPR002885 -
Seca10g05154 430 Pfam PPR repeat 47 68 IPR002885 -
Seca10g05154 430 Pfam PPR repeat 209 238 IPR002885 -
Seca10g05154 430 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 141 IPR002885 -
Seca10g05154 430 Gene3D Tetratricopeptide repeat domain 203 282 IPR011990 GO:0005515
Seca10g05154 430 Gene3D Tetratricopeptide repeat domain 104 202 IPR011990 GO:0005515
Seca10g05154 430 Gene3D Tetratricopeptide repeat domain 10 103 IPR011990 GO:0005515
Seca10g05154 430 FunFam Pentatricopeptide repeat-containing protein isoform A 158 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05154 Seca-Chr10 117864131 117869093 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05154 279 406 Sulfurtransferasese or Rhodanese AT1G79230 66.429 2.35e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05154 - - gmx:100795787 457.218