Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05129 ATGTCTTACATGCAAATTTCTCAAAAGTTTTATGATGCTTTCAAGCTTTGTGGCTCCTCCCTCAAATCCCCACCCATTGCTCGCAAACTTCATGCCCAGCTCATTCTCTCCGGTTTGGACGCTTCCATTTTCTTACTCAACAATCTACTGCACATGTACTCCAATTGTGGCTTGATAGACGATGCTTTTCAGGTTTTCTGCGAGGCCAATCATCGCAATAACTTCACTTGGAACACAATGATTCATTCCTTTGTTGATTCAGGCCGAATTAAGGAAGCAGAGAACTTGTTCGATGAAATGCCTATGAGAGTGAGAGACTCTGTTTCTTGGACCACCATGATGTCCGGGTATTGTCAAAATGGCCTCCCTGCTCTTAGCATCAAAACTTTTACTTCAATGCTTCGAGACTCTAACTACGACCCCTTTTCCTTTACTTGTGCAATGAAGGCTTGTGGGTGCCTTGCACAGACTCAATTGGCTCTTCAGTTGCATGCCCATGTCATCAAGTTAAATTTTGGAACCCAAACTTGTATTCAGAACTCCCTTGTTGATATGTACATTAAGTGTGGAGCAATCAGTTTGGCCGAGGCTGTTTTCTACAACACTGATAGCCCAAGTTTGTTTTGTTGGAACAGTATGATTTATGGTTATTCTCAATCATACGGACCCTATGAAGCTCTCCATATGTTCAACCGAATGCCTGAACGTGATTGTGTTTCTTGGAACATGATGATCTCAGTTTTCTCTCAACATGGCCTTGGGGTCCATTGTCTTAGCATGTTTATAGAGATGTGCAATCAGGGTTTTAGACCAAATTTCAAGACTTATGGCAGTGTTGCTCACATTCCTGGGGCCCTTTTCTTTGATGTAGATGGAATAGCAGATCGAAATACAAATCTGCCACACATGTTGCCATCAGAGGATGCTTTTGCTGCTGCTGTTTCTGCTCTTGCTAATGCATCTTTCCTCTGTTCACTGATTAAAAGAATGTTCCGAGTGTTTGGGCATGACAGAATTTGGGTATTAGATGGTGGTCTGCCAAGATGGCGTGCATCGGGTTATGATATTGAATCTAGCGCTTCGAGTGATGCTATTCTTAAAGCCAGTGCTGCAAGTGAGGCAATAGAGAAATTATATCAGGGACAAGCAGTTGGCCCAATCACATTTCAGACTAAATTTCAGCCACATCTTGTTTGGAGCCTTGATCAGAAGCAAAGACCTTGGACAATGCAATTGTTGGTTGTAGCATGCTTATCTCTGGCAGCCAAAGTAGATGAGACTGAAGTTCCTCTATCTCTTGATTTGCAGTTCATGCACCATGAACAGCTTCCAAGCATGCTCCAGTCCAGTCTTAACTGCCAGCAACTCAGCATGCTCTGA 1380 0.4304 MSYMQISQKFYDAFKLCGSSLKSPPIARKLHAQLILSGLDASIFLLNNLLHMYSNCGLIDDAFQVFCEANHRNNFTWNTMIHSFVDSGRIKEAENLFDEMPMRVRDSVSWTTMMSGYCQNGLPALSIKTFTSMLRDSNYDPFSFTCAMKACGCLAQTQLALQLHAHVIKLNFGTQTCIQNSLVDMYIKCGAISLAEAVFYNTDSPSLFCWNSMIYGYSQSYGPYEALHMFNRMPERDCVSWNMMISVFSQHGLGVHCLSMFIEMCNQGFRPNFKTYGSVAHIPGALFFDVDGIADRNTNLPHMLPSEDAFAAAVSALANASFLCSLIKRMFRVFGHDRIWVLDGGLPRWRASGYDIESSASSDAILKASAASEAIEKLYQGQAVGPITFQTKFQPHLVWSLDQKQRPWTMQLLVVACLSLAAKVDETEVPLSLDLQFMHHEQLPSMLQSSLNCQQLSML. 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05129 459 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Seca10g05129 459 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 278 360 IPR036873 -
Seca10g05129 459 Gene3D - 392 456 - -
Seca10g05129 459 FunFam Pentatricopeptide repeat-containing protein At3g49710 15 157 - -
Seca10g05129 459 Gene3D - 322 369 IPR036873 -
Seca10g05129 459 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 141 IPR002885 -
Seca10g05129 459 Pfam PPR repeat 47 68 IPR002885 -
Seca10g05129 459 Pfam PPR repeat 209 238 IPR002885 -
Seca10g05129 459 Pfam PPR repeat 239 269 IPR002885 -
Seca10g05129 459 Pfam PPR repeat 75 101 IPR002885 -
Seca10g05129 459 Pfam PPR repeat 108 136 IPR002885 -
Seca10g05129 459 FunFam Pentatricopeptide repeat-containing protein isoform A 158 287 - -
Seca10g05129 459 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 13 102 IPR046960 GO:0003723|GO:0009451
Seca10g05129 459 ProSiteProfiles Rhodanese domain profile. 280 358 IPR001763 -
Seca10g05129 459 Gene3D Tetratricopeptide repeat domain 9 102 IPR011990 GO:0005515
Seca10g05129 459 Gene3D Tetratricopeptide repeat domain 203 282 IPR011990 GO:0005515
Seca10g05129 459 Gene3D Tetratricopeptide repeat domain 103 202 IPR011990 GO:0005515
Seca10g05129 459 NCBIfam pentatricopeptide repeat 108 136 IPR002885 -
Seca10g05129 459 NCBIfam pentatricopeptide repeat 239 272 IPR002885 -
Seca10g05129 459 NCBIfam pentatricopeptide repeat 208 239 IPR002885 -
Seca10g05129 459 NCBIfam pentatricopeptide repeat 75 100 IPR002885 -
Seca10g05129 459 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 73 103 IPR002885 -
Seca10g05129 459 SUPERFAMILY Cyclin-like 404 440 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05129 Seca-Chr10 117398901 117404298 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05129 279 403 Sulfurtransferasese or Rhodanese AT1G79230 70.073 3.29e-61 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05129 - - gmx:100795787 459.914