Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05119 ATGGCTATGGCATTTGTGGGAGAGGCATTCCTTTCAGCTTCTGTTGAAGTGTTGTTAGAGAGAATAATTTCCCATGAGTTCCTAGACTTTTTTCATAGAAAGGAGCTTGATGTTTCACTCCTCAAAAAGCTGAAAATAACACTGCTGAGTCTTCAAGCTGTATTGAATGATGCTGAGGAGAAACAAATCACCAACCCTGCTGTCAAGGAATGGCTGGATGAGCTCAGAGATGCTCTCTACGATGCTGATGATTTGTTGGATGAAATCAACTTTGAGGCTTTGAGATGCAAACTCGAAGCTGGGTCTCAAAGTCAACCCATTAGTGACCAGGTTCTGAAATTCCTTTTCTCTTCTTTCAAACGGTTTTCTGGGGAAGGTGCTTCTGGCCGAGTTTGGCATGGAACACCCACTAGTTCTGTGGTAGATGAATCTGCTATTTATGGTAGAGACCATGACAAAAAGATACTTAAAGATTACTTGTTGTCACAAGATGATGGTGGCAGTGGCAGTAAAATTGGAGTGGTTACCATTGTGGGCATGGGTGGACTTGGTAAAACAACCCTTGCTAAACTCCTTTACGGTGATCACGAAGTGAAAGTGAAATTTGATTTGAAAGCATGGGCATTTACTTCAAAGGATTTTGATGTTTGCAAGGTGACTAAAAGCCTTCTGGAATCTGTTAGTTCAAAGCCAATTGTTACTAGTAATTTGAATACTGCCATTTTTAGAGCTGGGGAGATGGGAAGTAAGATCATCATCACAACTCGGGATGAAAGTGTAGCATTAGCCATGCAAACCTATCTTCCTATCCACTATTTGAGATCTCTTCAAAGTGAAGATTGCTGGTCTTTACTTGCCCATCATGCATTTGGACCAAATAACTGCAGGAAACAATCCAAACTAGAAGTAATTGGCAAAGAAATTGCAAAAAGATGTGGTGGCTTACCATTAGCTGCAGAAGCCCTTGGGGGTCTTCTCCGCACCAAATTATTGGAAAAGGAATGGAATAAGGTATTAAAAAGTAACATCTGGGATTTGCCAAATGTTAAGATGATGGTTTTGTTATGGATTGCAGAAGGCTTAGTACATCAGTCCAAAAGTGACAAAACTATGGAAGAAGTGGGTGATGAATACTTTGATGAATTAGTATCTCGGAATAAGGATCCAAAGCCACATGAAAGTCTTGAAAGAGCTCGTCATTTGTCATACAACAGAGGGAAGTATGACTGCTTCAATAAATTTAATACATTTTATGGATCAATGTGTCTTCGTACTTTTCTAGCCTTACCAATAAGACATTGGTGGTCATCAAAATATCCTAATTTGAGAAGCCATTACCTATCTAGCAAGTTATTATTTGACTTGTTGCCAGCAATGAGACGGTTGAGGGTGTTATCTTTGTCACACTATAATAATATCACTGAGTTGCCTAACTCTCTCGGAAATTTAATACATCTGCGATACTTAGATCTCTCTAACACTGAAATTGAAAGATTGTCGGAAGTAATATGCAAGCTCTACAATCTGCAGACCCTGTTGTTGTCCAAATGTTGCTCACTCACTGAATTACCTGAGGACATTGGAAATTTGGTTAATCTACGCCACCTTGATGTCAGTGATACTAAATTGAAGGAGATGCCTATTCAAATAGCCAAACTTCAAAATCTTCAAACTCTGTCCACCTTTGTTGTCAGCAAACAGCAAGATGGATTGAAGGTTGGAGAGATGAGAAAATTCCCCCATTTACAAGGGAAACTTTCAATCTTAAAGTTACAAAATGTTACTGATCCGTCTGATGCCTTTCAAGCCAACTTGAAGAAGAAAGAACAAATTGATGAGTTGACATTAGAATGGGATTGCAATGCTACTGAAGACTCACAAATGGAAAGGCTTGTACTTGAACAGCTGCAGCCCTCAAGAAATTTGAAGAAACTCACCATTCATTTCTATGGTGGAACCACCTTTCCAAACTGGTTAGGAGATCTCTCATTTGGCAACATGACGAGTTTGCGCAGCAGTGGCTGTGATCATTGTTGGTCGCTGCCTCCCCTAGGACAGTTACTTTGCCTCAAAGAACTCATAATTTCTGGACTAAAATCAATAAAGACAGTTGGTTCTGAATTCTATGGAAGTAGTTCCCCTTCTTTTCATCCATTTCCCTCATTGGAGATTCTGAGCTTTGAGGAGATGCCAGAGTGGGAGGAATGGGAGTTGATTGGAGGTACAGCTATAGAATTTCCTAGTCTAAGGCGTTTGTTTCTATGTGATTGTCCCAAACTCAAAGGAAACATACCAAAAAACCTTCCTTCCTTAGTTGAACTTGAGTTGTCCCAATGTCCTCTACTTGAGTCACAGCATCCATATGAGGTGGATAACAGCAACATTGGAAGGCCATCACATCTTGGGTGGATGATGCTTGGCCTTAATTCTCTTAGAGAGTTGACTATATCTGGCATTCCCTCTCTGACATACTTCCCAATAGATGTTCTGCCCACAACAATACAATCTCTTACTTTCCTTTCTTGTGAGAATCTGGAATCTTTACCTCATGAATCCTTGCCGAGTTACACGTCACTTGACAAATTGCAAATATTCAATAGTTGTGATTCAATGACATCCTTTCAGTTAGGCTGTCTGCCTGTACTCAAAAGTCTCTTCATCTTGGGTTGTAAAAATCTGAAATCTATTTCTGTTGCAGAAGATGCATCCCAAAGTCTCTCTTTTCTTCAAAGTTTATCCATATATGCTTGTCCTAATCTTGAGTCATTTCCACTAGGTGGACTGGCCACCCCTAACCTCAACCATTTCTTGGTGTCAAGTTATCGTAAGCTTAAGTCACTACCAGAACCAATTAACACCCTATCTGGCCTTTATCAATTGAGTATTTATGGGCTTCCAAATCTGCAGGCTTTTGCACAACCTGTTGTCAAAAGGTTGCTATTTTTGTAA 2949 0.3995 MAMAFVGEAFLSASVEVLLERIISHEFLDFFHRKELDVSLLKKLKITLLSLQAVLNDAEEKQITNPAVKEWLDELRDALYDADDLLDEINFEALRCKLEAGSQSQPISDQVLKFLFSSFKRFSGEGASGRVWHGTPTSSVVDESAIYGRDHDKKILKDYLLSQDDGGSGSKIGVVTIVGMGGLGKTTLAKLLYGDHEVKVKFDLKAWAFTSKDFDVCKVTKSLLESVSSKPIVTSNLNTAIFRAGEMGSKIIITTRDESVALAMQTYLPIHYLRSLQSEDCWSLLAHHAFGPNNCRKQSKLEVIGKEIAKRCGGLPLAAEALGGLLRTKLLEKEWNKVLKSNIWDLPNVKMMVLLWIAEGLVHQSKSDKTMEEVGDEYFDELVSRNKDPKPHESLERARHLSYNRGKYDCFNKFNTFYGSMCLRTFLALPIRHWWSSKYPNLRSHYLSSKLLFDLLPAMRRLRVLSLSHYNNITELPNSLGNLIHLRYLDLSNTEIERLSEVICKLYNLQTLLLSKCCSLTELPEDIGNLVNLRHLDVSDTKLKEMPIQIAKLQNLQTLSTFVVSKQQDGLKVGEMRKFPHLQGKLSILKLQNVTDPSDAFQANLKKKEQIDELTLEWDCNATEDSQMERLVLEQLQPSRNLKKLTIHFYGGTTFPNWLGDLSFGNMTSLRSSGCDHCWSLPPLGQLLCLKELIISGLKSIKTVGSEFYGSSSPSFHPFPSLEILSFEEMPEWEEWELIGGTAIEFPSLRRLFLCDCPKLKGNIPKNLPSLVELELSQCPLLESQHPYEVDNSNIGRPSHLGWMMLGLNSLRELTISGIPSLTYFPIDVLPTTIQSLTFLSCENLESLPHESLPSYTSLDKLQIFNSCDSMTSFQLGCLPVLKSLFILGCKNLKSISVAEDASQSLSFLQSLSIYACPNLESFPLGGLATPNLNHFLVSSYRKLKSLPEPINTLSGLYQLSIYGLPNLQAFAQPVVKRLLFL. 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05119 982 SMART LRR_typ_2 530 553 IPR003591 -
Seca10g05119 982 SMART LRR_typ_2 459 482 IPR003591 -
Seca10g05119 982 SMART LRR_typ_2 483 506 IPR003591 -
Seca10g05119 982 SUPERFAMILY L domain-like 427 783 - -
Seca10g05119 982 ProSiteProfiles Leucine-rich repeat profile. 461 483 IPR001611 GO:0005515
Seca10g05119 982 Gene3D - 37 124 - -
Seca10g05119 982 Pfam NB-ARC domain 240 340 IPR002182 GO:0043531
Seca10g05119 982 Pfam NB-ARC domain 172 230 IPR002182 GO:0043531
Seca10g05119 982 Coils Coil 41 61 - -
Seca10g05119 982 Gene3D Ribonuclease Inhibitor 794 975 IPR032675 -
Seca10g05119 982 Gene3D Ribonuclease Inhibitor 433 793 IPR032675 -
Seca10g05119 982 Pfam Rx N-terminal domain 10 103 IPR041118 -
Seca10g05119 982 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 807 970 - -
Seca10g05119 982 Pfam Leucine Rich repeats (2 copies) 461 501 IPR025875 -
Seca10g05119 982 SUPERFAMILY RNI-like 711 969 - -
Seca10g05119 982 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 359 IPR027417 -
Seca10g05119 982 Gene3D - 275 352 IPR042197 -
Seca10g05119 982 Gene3D - 133 241 IPR027417 -
Seca10g05119 982 PRINTS Disease resistance protein signature 766 782 - -
Seca10g05119 982 PRINTS Disease resistance protein signature 174 189 - -
Seca10g05119 982 PRINTS Disease resistance protein signature 312 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05119 Seca-Chr10 117149391 117152723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05119 473 567 WRKY Transcription Factor Family AT4G12020 41.667 5.47e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05119 - - mtr:25480434 1211.05