Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05112 ATGGATTTGGACCAGTGGATCTCGAAGGTGAAGGAAGGCCAGCACCTTCTTGAAGACGAGCTTCAACTTCTTTGCGAATATGTTAAAGAGATTCTTATTGAGGAGTCCAATGTGCAGCCTGTCAATAGTCCAGTAACTGTTTGTGGTGATATTCATGGTCAATTTCATGATCTAATGAAACTTTTTCAGACTGGGGGTCATGTGCCAGAGACAAATTACATTTTTATGGGAGACTTTGTTGATCGGGGTTACAATAGTCTTGAAGTATTCACCATCCTTTTGCTTCTAAAAGCTAGATACCCAGCTAATATTACCCTTCTACGTGGAAACCATGAAAGTAGACAACTAACACAGGTCTATGGATTTTATGATGAATGCCAGAGAAAGTATGGAAATGCTAATGCTTGGCGATATTGTACAGATGTGTTCGACTATCTTACACTTTCTGCAATTATAGATGGAACTGTGCTTTGTGTTCATGGTGGCCTTTCTCCGGACATTCGAACAATTGATCAGATAAGGGTCATCGAGCGAAACTGTGAAATTCCTCATGAGGGGCCATTTTGTGATCTAATGTGGAGTGATCCTGAAGATATTGAAACATGGGCAGTCAGTCCTCGTGGAGCAGGTTGGCTTTTTGGATCCCGGGTCACATCGGAGTTCAATCACATAAACAATCTCGATCTTGTTTGTCGAGCACATCAACTTGTTCAAGAAGGACTTAAGTATATGTTCCAAGATAAAGGTCTTGTAACTGTGTGGTCTGCGCCTAATTACTGTTACCGTTGTGGAAATGTAGCTTCTATTCTTAGTTTCAATGAAAATATGGAAAAAGAAATGACTTCTTGA 849 0.404 MDLDQWISKVKEGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEKEMTS. 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05112 282 ProSitePatterns Serine/threonine specific protein phosphatases signature. 107 112 IPR006186 GO:0016787
Seca10g05112 282 SMART pp2a_7 16 282 IPR006186 GO:0016787
Seca10g05112 282 SUPERFAMILY Metallo-dependent phosphatases 2 276 IPR029052 -
Seca10g05112 282 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 2 280 IPR047129 GO:0004722
Seca10g05112 282 PRINTS Serine/threonine phosphatase family signature 170 197 IPR006186 GO:0016787
Seca10g05112 282 PRINTS Serine/threonine phosphatase family signature 249 265 IPR006186 GO:0016787
Seca10g05112 282 PRINTS Serine/threonine phosphatase family signature 141 167 IPR006186 GO:0016787
Seca10g05112 282 PRINTS Serine/threonine phosphatase family signature 73 100 IPR006186 GO:0016787
Seca10g05112 282 PRINTS Serine/threonine phosphatase family signature 226 246 IPR006186 GO:0016787
Seca10g05112 282 PRINTS Serine/threonine phosphatase family signature 106 130 IPR006186 GO:0016787
Seca10g05112 282 PRINTS Serine/threonine phosphatase family signature 44 71 IPR006186 GO:0016787
Seca10g05112 282 Gene3D - 1 282 IPR029052 -
Seca10g05112 282 FunFam Serine/threonine-protein phosphatase 1 282 - -
Seca10g05112 282 Pfam Calcineurin-like phosphoesterase 44 235 IPR004843 GO:0016787
Seca10g05112 282 CDD MPP_PP2A_PP4_PP6 2 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05112 Seca-Chr10 116983658 116993847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05112 43 221 Calmodulin-binding Proteins AT5G63870 37.500 1.08e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05112 K15498 - pvy:116128297 588.186