Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05089 ATGGAGAATAATATGGAGGGTGAGCACTGGTGTAACATATGCTCTAAAATGGTGAACCCATTGACTGAAGCTGAGAACAAATGTCCATTCTGTGAGACAGAATTTGCTGAGGTAGTGGACAATCTAAGGGACCAAAATGATGCTATTGATTTAAGGTCAGCGTGGGTGTTCTCACTTTATGCCCCAATCTTTCTTGGCTTGTTGAGTGCTTTTAGCCCTTCTATAGCAAGCATTGCTTCACAAGAAAGTAGCAGCAGCTCAAGAAGGGAAGAAGGGGTTGAACAAGAGAGGGACAATGAGAATGAGAATGAAAATGAACTTGTTCTTGGGAGAAGAAGAAGAACCTCAACTTATATGATGCATCTCTTTCGCGGTCTTCATGTTAGGATGTTGTCTGAATCTGAGAACACAGAAGACAATAGGAACATAGATAGCAGTATACTTGTCATTGATCCATTCAATGAAGGGGCTTTGGTTGTCCGTGGTCCTAACTTGAACCACACAAGTAGTCCTAATGAGAATTCTCTTGGGTCCTTAAATGACTTTGTGGTTGGATCTGGCTTTGATTTGTTGTTACAGCATTTGGCACAAATTGGCCCTAGTGGATATGCAAGTGTGAACCCTCCAGCACAGAAGGCAGCAATTGAAGCTATGCCTAGTGTGATTAATGATGAAAAGTTGCAGTGCACAATATGTTTGGAGGATCTTGAGATTGGGAGTGAGGCTAAGGAGATGCCATGTAAGCATAAATTCCACAATGTTTGCATTGTCTCATGGCTAAAGCTCCATAGTTCTTGTCCAGTTTGCAGGTTTCAGATGCCATATGAGGATTCAGCTGTTGAAGCTGATCTAGGAATTGGAAATGGGGACAATCAAAACAATGAGCTAGTCAGAGCTAGAGAAGAGAGGACTAGAAATGGAAGGAGGAACTGGTTTCCAGTGCTGCAATCATTCAATAATTTTCTTCCTTCTCCTTAA 978 0.4182 MENNMEGEHWCNICSKMVNPLTEAENKCPFCETEFAEVVDNLRDQNDAIDLRSAWVFSLYAPIFLGLLSAFSPSIASIASQESSSSSRREEGVEQERDNENENENELVLGRRRRTSTYMMHLFRGLHVRMLSESENTEDNRNIDSSILVIDPFNEGALVVRGPNLNHTSSPNENSLGSLNDFVVGSGFDLLLQHLAQIGPSGYASVNPPAQKAAIEAMPSVINDEKLQCTICLEDLEIGSEAKEMPCKHKFHNVCIVSWLKLHSSCPVCRFQMPYEDSAVEADLGIGNGDNQNNELVRAREERTRNGRRNWFPVLQSFNNFLPSP. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05089 325 Pfam Ring finger domain 228 270 IPR001841 -
Seca10g05089 325 MobiDBLite consensus disorder prediction 87 107 - -
Seca10g05089 325 ProSiteProfiles Zinc finger RING-type profile. 229 270 IPR001841 -
Seca10g05089 325 FunFam E3 ubiquitin-protein ligase RNF181 200 276 - -
Seca10g05089 325 SMART ring_2 229 269 IPR001841 -
Seca10g05089 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 276 IPR013083 -
Seca10g05089 325 MobiDBLite consensus disorder prediction 79 107 - -
Seca10g05089 325 SUPERFAMILY RING/U-box 217 275 - -
Seca10g05089 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 94 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05089 Seca-Chr10 116647007 116647984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05089 96 296 C3H Transcription Factor Family AT1G26800 33.659 1.89e-25 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05089 - K11982 gmx:100790855 495.738