Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05087 ATGTACTGTCATCAGCAGCAGCAACAAGCTAAGAACATCCACGCTTTAAGGATGCAAGGAGGAGGCAATGGAGCTGGAGATTCAGGACTTGTTCTCTCAACTGATGCTAAGCCTAGACTAAAATGGACGCCAGATCTTCATGAACGGTTCATAGAAGCAGTCAATCAACTTGGAGGAGCAGATAAAGCTACACCAAAAACGGTATTGAAAATTATGGGGATCCCTGGACTTACTCTATACCACTTGAAGAGTCACCTACAGCAGAAATACAGGATCAGTAAAAATATGCATGGCCAAACCAATACTGGCAACAACAAAATAGCATCAACCACAGAAGCACCAGGCAGAATGTCAGAAGCAAGTGGAATCCAAATGAAACATTTAAGCATAGGACTCCAGACAAACAAAAATTCAGAAATAAATGAGGCCTTAGAGATGCAGATTGAAGTGCAAAGAAGACTACATGAGCAGCTTGAGCAGGTACAGCGACACTTACAGCTAAGGATAGAGGCTCAAGGAAAGTACCTTCAGACAGTGCTGGAAAAAGCTAGGGAGACACTAGGAAGACAAAATTTAGGTACTGTGGGACTTGATGCTGCAAAGGTTCAACTGTCTGAACTGGCATCCAGAGTATCCACTCAATGCCTTGATTCTAAATTTTCAGAACTGAAAGAATTGCAGGTACTGTGGCCTCAGCAAACACAAGAAGGCAAAGCCATTGATTGTTCAATGGGCAGTTTCTTAACCTACAGTGAGGAATCTGAAAGAGACCAAGAAACACATAACGGGGGCTTGAATTTGAGAGCATACAATGGCACTCCTTTCTTAGCTTCGAAAGAGTGTGTGGAGGAAGAGTCTATGCTTTTAAAGTCTGATCTCTCATTGTGTGAAGAAGTGAAGGAGAATAATATGATGTTTCTTTCCTCATCAAATGATGAAGTACTAAAGGGGAAGTTTTTACCAGAAAGGACCTCAAGCCTCTTATCCATGAATGTGGGAGTTCCAGAAGAAAAATTTGGAAGAATAACTGTTTCAAAGGAAGATTTAAAAGGTGAAGGCTGGAAGAGAAGAGACAGTAGTGAAACTAGTCGAGTGCCAGTTAAAATGAACCATGACAAAGTTTCTCAAGATTATAGACTGGCTAACCTTGAAGTGAAACTGGACCTAAATTCCCATGGTGATAATGATGCTTCTTCCCAATACCAAAGGTTTGACTTGAATGGTTTCAGCTGGAATTGCTAG 1242 0.4138 MYCHQQQQQAKNIHALRMQGGGNGAGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKIMGIPGLTLYHLKSHLQQKYRISKNMHGQTNTGNNKIASTTEAPGRMSEASGIQMKHLSIGLQTNKNSEINEALEMQIEVQRRLHEQLEQVQRHLQLRIEAQGKYLQTVLEKARETLGRQNLGTVGLDAAKVQLSELASRVSTQCLDSKFSELKELQVLWPQQTQEGKAIDCSMGSFLTYSEESERDQETHNGGLNLRAYNGTPFLASKECVEEESMLLKSDLSLCEEVKENNMMFLSSSNDEVLKGKFLPERTSSLLSMNVGVPEEKFGRITVSKEDLKGEGWKRRDSSETSRVPVKMNHDKVSQDYRLANLEVKLDLNSHGDNDASSQYQRFDLNGFSWNC. 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05087 413 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 94 IPR017930 -
Seca10g05087 413 Pfam Myb-like DNA-binding domain 39 88 IPR001005 -
Seca10g05087 413 Gene3D - 36 95 - -
Seca10g05087 413 Coils Coil 141 161 - -
Seca10g05087 413 FunFam Myb family transcription factor 36 95 - -
Seca10g05087 413 Pfam MYB-CC type transfactor, LHEQLE motif 139 185 IPR025756 -
Seca10g05087 413 MobiDBLite consensus disorder prediction 350 369 - -
Seca10g05087 413 NCBIfam myb-like DNA-binding domain, SHAQKYF class 37 93 IPR006447 GO:0003677
Seca10g05087 413 SUPERFAMILY Homeodomain-like 36 92 IPR009057 -
Seca10g05087 413 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 10 266 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05087 Seca-Chr10 116626494 116629945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05087 69 412 G2-like Transcription Factor Family AT3G04030 48.406 2.12e-86 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca10g05087 Myb_DNA-binding 2.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05087 - - gmx:100789797 646.736