Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05082 ATGGAAGAAGCTGTTGTGGTGAATAAAGGAGATGAAGCTCTAGATTTGCCTCCAGGTTTCAGGTTCCACCCTACTGATGAGGAAATCATCACTTGTTATCTCACAGAGAAGGTGTTGAATAGCAATTTCAGTGCAACTGCTATTGGAGAAGCTGATCTAAACAAGTGTGAGCCTTGGGACTTACCCAAGATAGCCAAGATGGGTGAGAAAGATTGGTACTTTTTCTACCAGAGAGATAGGAAGTATCCAACTGGTATGAGAACCAATAGAGCAACTCAATCTGGGTATTGGAAAGCCACTGGTAAAGACAAGGAGATTTACAAAGGGAAAACCAATATCTTGGTGGGGATGAAGAAGACTCTTGTGTTTTACAAAGGAAGAGCTCCAAAAGGTGAAAAAACCAACTGGGTTATGCATGAATTCAGATTGGAAGGCAAATTCTCAGGTCACAACCTTCCTAAGGCTGCAAAGGATGAATGGGTTGTCTCCAAGGTTTTCCATAAGAACACAGATCTTAAAAAGATCCCAATTTCAGGTATTTTGAGGATAAACTCAATTAGAAATAATGATCTATTGGATTTTTCTTCAATCCCTCCTCTTGTGGATCATACTCATCCTTATGGAGACTACACCACCAACAAGGCTTCAAGTGACTTCAAGGAATCTAACATTATAAGACAATCAGCACCATCATCATCATCACTTAAATCACCATCAGACGGCTATTATTCTCCCAGCTTATTGATCAACAACAATCAGCAGCACCTGATCAAGCCAGATAATAACACAACCTATCATCAAATTCCCAATTATGTCACTGTCACCAACCAACCAGGGAATTTCAGTAATCCAATAATGGGAAGCACATCCTTGAATTTGCTCAATAACAGTGACATGTATGGATTATTGGACAAAGAGTGCAAGATGGAGTCATTGGTAAGTGTCTCACAGGACACATGTGTGAGCAATGACATAAACACTGACACATCCTCTGTGGTTTCAAAGCAAGACAATATCATAATGCAAAGGAATAAAGCATTGTATGAGGATTTTGAGGTTCCTTCCTCAGTTATCCCTCTCTCAGACTTGGGATACCTATGGGATGGCTATTGA 1113 0.4016 MEEAVVVNKGDEALDLPPGFRFHPTDEEIITCYLTEKVLNSNFSATAIGEADLNKCEPWDLPKIAKMGEKDWYFFYQRDRKYPTGMRTNRATQSGYWKATGKDKEIYKGKTNILVGMKKTLVFYKGRAPKGEKTNWVMHEFRLEGKFSGHNLPKAAKDEWVVSKVFHKNTDLKKIPISGILRINSIRNNDLLDFSSIPPLVDHTHPYGDYTTNKASSDFKESNIIRQSAPSSSSLKSPSDGYYSPSLLINNNQQHLIKPDNNTTYHQIPNYVTVTNQPGNFSNPIMGSTSLNLLNNSDMYGLLDKECKMESLVSVSQDTCVSNDINTDTSSVVSKQDNIIMQRNKALYEDFEVPSSVIPLSDLGYLWDGY. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05082 370 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Seca10g05082 370 Gene3D NAC domain 25 173 IPR036093 GO:0003677|GO:0006355
Seca10g05082 370 FunFam NAC domain-containing protein 100-like 25 172 - -
Seca10g05082 370 SUPERFAMILY NAC domain 12 169 IPR036093 GO:0003677|GO:0006355
Seca10g05082 370 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 261 - -
Seca10g05082 370 ProSiteProfiles NAC domain profile. 16 168 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05082 Seca-Chr10 116529186 116531235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05082 1 368 NAC Transcription Factor Family AT5G18270 51.587 1.62e-120 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca10g05082 NAM 1.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05082 - - aprc:113861501 458.373