Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05079 ATGGGAACCCCACAATCCAATAACTTGCCACCAGGATTTAGGTTCCACCCAACTGATGAGGAGCTCATTCTTCACTACCTTAGGAAGAAGGTGGCCTTCATACCCTTGCCAGTTTCCATCATTGCAGAGGTTGATATCTACAAGTTTGATCCATGGGAGCTACCAGCAAAGGCTGCGTTTGGGGAGAAAGAATGGTACTTTTTCAGTCCTAGAGACCGCAAGTACCCAAATGGGGCGAGGCCAAACAGGGCAGCAGCTTCAGGGTATTGGAAGGCCACAGGAACAGATAAGAGTATAGTGGCATCATGGGCAGGAGGAAGAGTGAAAGAGATCTTTGGTGTGAAGAAGTCTTTGGTGTTTTACAAAGGAAGACCCCCAAAGGGTGTGAAGACCAATTGGATCATGCATGAATATCGCCTTATAGATTACAACAAACCCATTAAGCTCAAAGACACCTCCATGAGGTTGGATGACTGGGTTCTGTGCAGGATATACAAGAAGTCCAAACACACTCTATCTTCAACCACAGAGGAAGCAGTGAATGATCATGAGCAAGATCAAGCAGAAGAACAACAATTGGAAGACACCCTTTTACCAATCTCTATTAAGAGTCCTGTCTCTCCCTTTCCTCCTTCTCAGAGCACACTCATATCTCAGAAATCTCTATCCTTCTCCAACCTCTTGGATGCCACAGATTACTCCATGCTCAGCACCTTCTTATCATCTGAGAACCATTCTCCAACTGCACCCTTCAATTCAGGGAATCTTAATCAGGAATACCCCCAAAACTACACCACAACCAATAGCTGCTTGTTTCAGAGGAATTCTCAATCAAACCATTCAGTTTCCTACATGGAAAATGTCAGGCCTAAGCGCCAGCTATCAAACATAGATGATGAGGACATGCTGCTATACCCATCAAAGAAATACCTTATTAGCTCATCTTGCAATTTCCCTAACACCACCAATTTCCAAGATGAGAACCCACAATGGAACTTCCTCTTCAAACATTCATTTATGAACCAATTACATAATTAA 1038 0.4374 MGTPQSNNLPPGFRFHPTDEELILHYLRKKVAFIPLPVSIIAEVDIYKFDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKSIVASWAGGRVKEIFGVKKSLVFYKGRPPKGVKTNWIMHEYRLIDYNKPIKLKDTSMRLDDWVLCRIYKKSKHTLSSTTEEAVNDHEQDQAEEQQLEDTLLPISIKSPVSPFPPSQSTLISQKSLSFSNLLDATDYSMLSTFLSSENHSPTAPFNSGNLNQEYPQNYTTTNSCLFQRNSQSNHSVSYMENVRPKRQLSNIDDEDMLLYPSKKYLISSSCNFPNTTNFQDENPQWNFLFKHSFMNQLHN. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05079 345 Gene3D NAC domain 18 172 IPR036093 GO:0003677|GO:0006355
Seca10g05079 345 ProSiteProfiles NAC domain profile. 9 167 IPR003441 GO:0003677|GO:0006355
Seca10g05079 345 FunFam NAC transcription factor 56 18 172 - -
Seca10g05079 345 Pfam No apical meristem (NAM) protein 10 140 IPR003441 GO:0003677|GO:0006355
Seca10g05079 345 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 262 - -
Seca10g05079 345 SUPERFAMILY NAC domain 6 167 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05079 Seca-Chr10 116487224 116489147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05079 9 342 NAC Transcription Factor Family AT3G04070 50.440 5.95e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca10g05079 NAM 8.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05079 - - vun:114194335 479.174