Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05076 ATGAACGACCTAATGACCAAGTCATTCACCAGCTACGTCGATCTGAAGAAAGCTGCTATGAAAGACCAACAAGCAGATTTAGAAGCTGGTATTGTTCCTCCACTTTCCGATGTGGAACTAACCTCTTCCACCACCCAATTGGACACTGACATGGGTCTCTTCTTGGAAGAGGCAGAGAAAGTGAGAACTGAAATGGGTCATCTTCGTGACTTTCTTGGAAATCTCCAACAAGCCAATGAAGAAAGCAAGTCCCTTCACAAGCCCGAAGCTTTGAAATCACTCAGAAACAGAATCAACACAGACATCATCACTGTTCTGAAGAAGGCAAGGTCCATAAGGACCCAGCTTGAAGAAATGGATCGTGCTAATGCAGCAAATAGGAGACTCTCTGGTCTCAAAGATGGCACCCCAGCAATTTACAGAACCAGAATTGCAGTCACCAATGGTCTGAGAAAGAAGCTGAAGGAACTCATGATGGAGTTTCAGGGGTTGAGACAGAGGATGATGAGTGAGTACAGAGAAACTGTTGGCAGAAGGTATTTCACTGTGACTGGGGAATACCCAGGTGAAGAAGTGATTGAGAAGATAATTTCCAATGGGGATGATGAAGGGTTTTTGGGGAAAGCCATAAAGGAACATGGAAGAGGGAAGGTTCTGGAAACTGTGGTGGAGATACAGGATAGGCATGATACTGCTAAAGAGGTTGAGAAGAGCTTGTTGGAATTGCATCAAGTGTTTTTGGATATGGCTGTGATGGTGGAAGCACAAGGTGAGAAAATGGATGATATTGAGCATCATGTGCTTCATGCTTCTCACTATGTTAAAGATGGAACCAAGAACCTTCAGACTGCAAAGAAATACCAGAGGAGCAGTAGGAAGTGGATGTGCATTGGGATCATACTTCTATTGATTTTGATTCTTGTCATTGTCATCCCAATTGCCACCAGTTTCAGCAGTTCTTGA 963 0.4382 MNDLMTKSFTSYVDLKKAAMKDQQADLEAGIVPPLSDVELTSSTTQLDTDMGLFLEEAEKVRTEMGHLRDFLGNLQQANEESKSLHKPEALKSLRNRINTDIITVLKKARSIRTQLEEMDRANAANRRLSGLKDGTPAIYRTRIAVTNGLRKKLKELMMEFQGLRQRMMSEYRETVGRRYFTVTGEYPGEEVIEKIISNGDDEGFLGKAIKEHGRGKVLETVVEIQDRHDTAKEVEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLQTAKKYQRSSRKWMCIGIILLLILILVIVIPIATSFSSS. 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05076 320 CDD SynN 51 198 IPR006011 GO:0016020
Seca10g05076 320 FunFam Syntaxin 132 215 315 - -
Seca10g05076 320 Gene3D - 218 318 - -
Seca10g05076 320 SMART SynN_4 46 173 IPR006011 GO:0016020
Seca10g05076 320 ProSitePatterns Syntaxin / epimorphin family signature. 228 268 IPR006012 GO:0005484|GO:0006886|GO:0016020
Seca10g05076 320 SUPERFAMILY t-snare proteins 49 277 IPR010989 GO:0016020|GO:0016192
Seca10g05076 320 CDD SNARE_syntaxin1-like 221 283 - -
Seca10g05076 320 PANTHER SYNTAXIN 76 306 IPR045242 -
Seca10g05076 320 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 222 284 IPR000727 -
Seca10g05076 320 Coils Coil 147 167 - -
Seca10g05076 320 Pfam Syntaxin 54 257 IPR006011 GO:0016020
Seca10g05076 320 Gene3D - 51 179 - -
Seca10g05076 320 Pfam SNARE domain 259 310 IPR000727 -
Seca10g05076 320 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 48 179 - -
Seca10g05076 320 SMART tSNARE_6 217 284 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05076 Seca-Chr10 116412857 116414375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05076 1 320 SNARE and Associated Proteins AT1G08560 65.839 2.48e-137 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05076 K08486 - gmx:100816016 521.161