Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05071 ATGAAGGTATGTGTACAGATAACTTACACATCTGTGAGAAAATTTAAAAATGCTTATATGATATTGTTATGTAGGCTAGTTTGGTTATCAGCGGTTGAAGGGACAGAGAAAAATACAAATAATGTTACCTGTGATTGCTCCTTTGTCAATGGCACCATCTGCCATGTCACTAACATCCTTTTGAAAGGACTAGATCTTGTGGGCACTCTCCCGCCAGAACTGGTCAAGTTGCCTTACCTACAAGAAATAGACTTTACTCGCAATTATCTAAACGGTACAATTCCTAGGGAATGGGGCTCCATGAATCTTATCATAATTGGACTAAACGGGAATAAACTATCGGGTTCAATCCCTATAGAGCTAGCAAACATTACCACCCTTCAAAGTTTTACCGTGGAGTTCAATCAACTCTCTGGAAATCTTCCTCCTGAGCTTGGGAATCTTCCAAACATTCAAAGACTGTTACTTACGTCCAACAATTTTACTGGAGAATTACCTGCAACATTTGCCAAGCTCACTACTTTGCAAGATGTTCGAATTGGGGACAATAATTTCTCTGGAAAGATACCTGATTTTATTCAAAATTGGACGAGTCTCAACAAACTAGTGATTCAAGGAACAGGGCTAAGTGGGCCAATTCCTTCAGGAATTTCACTTCTAGGAAATTTAACTGACCTGAGAATTAGTGATCTAAAAGGATCTGAATATTGGCCTTTTCCACCACTCAACAATTTGAAAAATTTGAAAACTCTTGTTTTCAGAGCTAGAAAATTAAAAGAGGCACTATTGATCCTCCTTTTGTTGTTTATCTTACTGTTTCACAGGATTCTAAGGAGTTGCAACATTAATGGAACAATACCTGAATATCTTGGGACTTTAACGAATTTGAAAACCTTATATTTAACGGGAAACCTACTCAGTGGACCAGTCCCAGCATGGACAGAAAAAGTAAAAAATATAGATCTTTCATACAATAACTTCAGCATTGGAAGCTCAGGGCAACCATCATGTCAACAGGGAAATGTGTTTGAGACTAGTGCAATATATAATACATGCCTAATATATTTTGTTCACTCTACTCTGCTTGTCCCAGTTTCATACTCTCTTCATATTAATTGTGGTGGAAAGCAAGTAACAATCAATGGAAGTGAAACATATGGTGCTGATACAGATACAGCAGGACCAGCTAGATTCCACCTTGGTGGAACTAACTGGGCATTTAGCAGCACTGGTCACTTCTTGGATAATGATCGTGGAGGCTATTCTGTTTGGCAAAACCAATCTAGGCTTTCCATGGCTGATGCTGAATTATACATGGATGCACGTGTTTCTCCTATTTCTTTGACTTATTATGGATTTTGCTTGGGAAATGGAAACTACACAGTAAATCTACACTTTGCAGAGGTAATGTTCACTGATGGTCAAACATACAAGAGCCTAGGAAGGCGTGTATTTGATGTTTACATTCAGGGGAATTTGGTGTTGAAGGATTTCAATATTGCAGAAGAAGCGGGGGGAGTTAATAAAGCAGTCACAAAATCACTCAGTGTTGTTATTAGTAGTAACACATTGGATATTCGGTTATATTGGGCTGGAAAAGGGACAATTAGTATTCCATTTAAAGCAGTATATGGTCCTCTCATATCAGCTATATCTGTGAATCCTGAAAATGGAAGTAGCATGTCTGCAGGGGCTGTAGCTGGAATTGTGGCTACTGCTGTAGTAGCCATTTTCATCCTCATGTTTGGTATACTATGGTGGAGAGGCTGTCTCAGACAGAAAAATTCTTTATCAAAAGAGTTAAAGGGTTTAGATCTGCAAACGGGTATATTTACCTTACGGCAAATAAAAACAGCAACAAACAACTTTAATGTTGCCAATAAGATTGGAGAAGGAGGGTTCGGTCCTGTATACAAGGGAACTCTATTGGATGGAACTACAGTAGCTGTCAAACAACTCTCTTCAAAGTCAAGGCAAGGGAATCGTGAGTTTATTAATGAGATAGGCATGATTTCAGCTTTACAACACCCTTGTCTTGTTAAACTTTATGGATGTTGTGTTGAAGGAGATCAATTATTGTTGGTATATGAATATATGGAAAATAATAGTCTAGCTCGCGCTTTATTTGGCCCAGAAGAATACCAAATAAAATTAGATTGGCCAACAAGGCAAAAGATTTGTGTTGGTATCGCTAGAGGTTTGGCATATCTCCATGAAGAATCAAGATTGAAAATTGTTCATAGGGACATCAAGGCCACTAATGTTTTGCTTGATAAAGATCTCAATCCAAAGATATCTGACTTTGGTTTAGCCAAGCTCGACGATGAGGACAATACTCACATAAGCACTCGAATAGCTGGGACATATGGGTACATGGCTCCCGAATATGCTATGCATGGTTATTTGACTGATAAAGCAGATGTTTATAGCTTCGGAATTGTTGCCTTGAAACTTGTAAGTGGGAGGAGCAATACTGTTCAACAAAAAAAAGAAGAAGCATTCCATCTTCTTGATTGGGCACATCTATTAAAAGAGAAAGATAATCTAATGGAACTAGTTGATAAAAGATTGGGTTTAGAATTCAATGAAGAGGAGGTTATGATGATGATCAACATAGCTCTTCTATGCACGAATGTTACTGCCTCCCTTAGGCCTACAATGACTTCAGTGGTGAGCATGCTTGAAGGAAAATCTGTTGTTTTGGAGATGGTTTCAGAGTCAAGTGAAGTACTAGATGAGAAGAAGTTGGAGACAATGCGGCATTATTACCAAGAGATTGAAAAAAATAAATTAAGCGGGACTCAAAACCAGAATATATTGGAGGGTGACCCATGGACTGGTTCATCTACATCTGTGACTGATCTTTATCCTGTTAACCTAGATTCTTCTTATTGGGAGAAAAGAGGTTAG 2910 0.3832 MKVCVQITYTSVRKFKNAYMILLCRLVWLSAVEGTEKNTNNVTCDCSFVNGTICHVTNILLKGLDLVGTLPPELVKLPYLQEIDFTRNYLNGTIPREWGSMNLIIIGLNGNKLSGSIPIELANITTLQSFTVEFNQLSGNLPPELGNLPNIQRLLLTSNNFTGELPATFAKLTTLQDVRIGDNNFSGKIPDFIQNWTSLNKLVIQGTGLSGPIPSGISLLGNLTDLRISDLKGSEYWPFPPLNNLKNLKTLVFRARKLKEALLILLLLFILLFHRILRSCNINGTIPEYLGTLTNLKTLYLTGNLLSGPVPAWTEKVKNIDLSYNNFSIGSSGQPSCQQGNVFETSAIYNTCLIYFVHSTLLVPVSYSLHINCGGKQVTINGSETYGADTDTAGPARFHLGGTNWAFSSTGHFLDNDRGGYSVWQNQSRLSMADAELYMDARVSPISLTYYGFCLGNGNYTVNLHFAEVMFTDGQTYKSLGRRVFDVYIQGNLVLKDFNIAEEAGGVNKAVTKSLSVVISSNTLDIRLYWAGKGTISIPFKAVYGPLISAISVNPENGSSMSAGAVAGIVATAVVAIFILMFGILWWRGCLRQKNSLSKELKGLDLQTGIFTLRQIKTATNNFNVANKIGEGGFGPVYKGTLLDGTTVAVKQLSSKSRQGNREFINEIGMISALQHPCLVKLYGCCVEGDQLLLVYEYMENNSLARALFGPEEYQIKLDWPTRQKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDDEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALKLVSGRSNTVQQKKEEAFHLLDWAHLLKEKDNLMELVDKRLGLEFNEEEVMMMINIALLCTNVTASLRPTMTSVVSMLEGKSVVLEMVSESSEVLDEKKLETMRHYYQEIEKNKLSGTQNQNILEGDPWTGSSTSVTDLYPVNLDSSYWEKRG. 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05071 969 ProSitePatterns Serine/Threonine protein kinases active-site signature. 745 757 IPR008271 GO:0004672|GO:0006468
Seca10g05071 969 SMART serkin_6 623 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g05071 969 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 592 698 - -
Seca10g05071 969 Gene3D Phosphorylase Kinase; domain 1 589 698 - -
Seca10g05071 969 ProSiteProfiles Protein kinase domain profile. 623 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g05071 969 Gene3D Ribonuclease Inhibitor 272 348 IPR032675 -
Seca10g05071 969 SUPERFAMILY L domain-like 52 328 - -
Seca10g05071 969 FunFam Leucine-rich repeat receptor protein kinase EMS1 70 166 - -
Seca10g05071 969 Pfam Protein kinase domain 624 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g05071 969 Pfam Malectin domain 368 551 IPR021720 -
Seca10g05071 969 SUPERFAMILY Protein kinase-like (PK-like) 607 901 IPR011009 -
Seca10g05071 969 Gene3D Transferase(Phosphotransferase) domain 1 699 911 - -
Seca10g05071 969 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 167 232 - -
Seca10g05071 969 Gene3D Ribonuclease Inhibitor 160 264 IPR032675 -
Seca10g05071 969 CDD STKc_IRAK 629 896 - -
Seca10g05071 969 FunFam Putative LRR receptor-like serine/threonine-protein kinase 699 906 - -
Seca10g05071 969 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 366 556 - -
Seca10g05071 969 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 39 922 - -
Seca10g05071 969 Gene3D Ribonuclease Inhibitor 28 159 IPR032675 -
Seca10g05071 969 Gene3D - 366 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05071 Seca-Chr10 116363026 116381439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05071 61 926 Receptor kinase-like Gene Family AT1G53420 55.543 0.0 957
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca10g05071 Pkinase 5.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05071 - - gmx:732563 1278.46