Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05070 ATGACTTCTTTAGAAGGAAACACTTCAAGAAAAAAGACAAGGTCAAGCAGCAGGGGAAAGACTGAGATCAAGAAAGTGGAGCAACTCAACAAACGCTATGTGACATTTTCAAAACGCAAGCTTGGCCTTTTCAACAAAGTGACTGAGCTCTCCATTCTTTGCCAAGCAGAGACAGCTTTGATCATTACTTCTCCCAATGACAAACTCTATGCTTGTGGCTACCCTTCCCCTGACACTGTCATTCAAAGGTTCCTCAACAGAGGACCACCACCACCTTCTGCTGCCAACAACAAAATTAAGAGGGAACAAGAGGAAACCATTGAAGGCCTAAGGCTACAATATGAGGCCATTCAGGATCAATTGAAAGAAGAAAAGAAGAACCTTGCCATGATGGAGACACAAAATAGTAGTACTAATTCTTGTTTCCCTTCTTGGTGGAATCTCTCAATTGAGAATATGGATTTGGAGTGCCTTCAGCACTTTAAACAATCAATGGAAAATCTTAGGCTTAATGTAATTGTGGCAATGCAGGAGAAGAGGTTGAGGTTCAATCCACTTCCACCAGAGCCACTTTTGATAGCTCCACCAGTACCCCCTGTGTTTCCAAATAGGTCATTATTTAGTGGGCAACAACAAGTACATGATAGTTGGAAGAGTGTTTGTAGTGGTAGTGGTACTAGCGGCATGGTTCCTAGTTTTGGCCATTATTAA 711 0.4205 MTSLEGNTSRKKTRSSSRGKTEIKKVEQLNKRYVTFSKRKLGLFNKVTELSILCQAETALIITSPNDKLYACGYPSPDTVIQRFLNRGPPPPSAANNKIKREQEETIEGLRLQYEAIQDQLKEEKKNLAMMETQNSSTNSCFPSWWNLSIENMDLECLQHFKQSMENLRLNVIVAMQEKRLRFNPLPPEPLLIAPPVPPVFPNRSLFSGQQQVHDSWKSVCSGSGTSGMVPSFGHY. 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05070 236 PANTHER MADS BOX PROTEIN 18 172 - -
Seca10g05070 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 71 IPR002100 GO:0003677|GO:0046983
Seca10g05070 236 Coils Coil 100 134 - -
Seca10g05070 236 SUPERFAMILY SRF-like 17 89 IPR036879 GO:0003677|GO:0046983
Seca10g05070 236 MobiDBLite consensus disorder prediction 1 22 - -
Seca10g05070 236 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Seca10g05070 236 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Seca10g05070 236 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Seca10g05070 236 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Seca10g05070 236 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Seca10g05070 236 Gene3D - 29 108 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05070 Seca-Chr10 116345725 116346435 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05070 14 174 Type I MADS-box Gene Family AT5G60440 36.196 7.98e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca10g05070 SRF-TF 2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05070 - - gmx:121175156 200.675