Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05068 ATGAAGAAAGTGAACAAGCGTTTGTTACGTGACATTTTCAACAAAGTGACTGAGCTATCAATTCTATGCGAAGCAGAGACAGCTTTGATCATTACTTCTCCAAATGACAAACTCTATGCTTGCGGCTACCCTTCCCCTGACACTGTCATTCAGGGGTTCCTCACCACAAGAGGAAACCGTTGA 183 0.4372 MKKVNKRLLRDIFNKVTELSILCEAETALIITSPNDKLYACGYPSPDTVIQGFLTTRGNR. 61
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05068 60 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 40 IPR002100 GO:0003677|GO:0046983
Seca10g05068 60 SUPERFAMILY SRF-like 10 56 IPR036879 GO:0003677|GO:0046983
Seca10g05068 60 ProSiteProfiles MADS-box domain profile. 12 45 IPR002100 GO:0003677|GO:0046983
Seca10g05068 60 Gene3D - 2 60 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05068 Seca-Chr10 116326689 116326871 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05068 12 54 Type I MADS-box Gene Family AT5G60440 41.860 8.53e-08 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca10g05068 SRF-TF 5.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05068 - - aip:107627188 73.559