Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05040 ATGCATCATTCCCTGCAAAACCAAGGAGGAGAAGGTCGTAACCACACCCTTCAACTCCAAAGGACGAAAGGGCAGGCCCGCGGCTCTAAGAACAAACCTAAGCCACCATTCATAATCAAGGAAGATAGAAACCAATGTGTTAAACCAATAATCATTGAAATCTCTGCTGGAAATGACATTATTGAGGCCATCATTAAGTTTGCTTCTCGTGATTATGTCGGTATCTCAGTGCTAAGTTGTTCAGGTTCTGGCTCTAATGTTACCCTTTGTCATCCTCTTTCTGATATTGCTCCTCCTTTGTCGTTTACCGAAGATTTCAACTTTATATCTCTCATGGGTACTGACATGAGTGGTGTTTTTACTCCACTCTCCCGTACCCTTTCTTGTTCCTCCCTTTTCATTAATTTCTCATGA 414 0.4203 MHHSLQNQGGEGRNHTLQLQRTKGQARGSKNKPKPPFIIKEDRNQCVKPIIIEISAGNDIIEAIIKFASRDYVGISVLSCSGSGSNVTLCHPLSDIAPPLSFTEDFNFISLMGTDMSGVFTPLSRTLSCSSLFINFS. 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05040 137 MobiDBLite consensus disorder prediction 1 37 - -
Seca10g05040 137 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 15 127 IPR014476 GO:0003680
Seca10g05040 137 MobiDBLite consensus disorder prediction 1 26 - -
Seca10g05040 137 SUPERFAMILY AF0104/ALDC/Ptd012-like 46 114 - -
Seca10g05040 137 Gene3D - 47 131 - -
Seca10g05040 137 Pfam Plants and Prokaryotes Conserved (PCC) domain 48 116 IPR005175 -
Seca10g05040 137 CDD DUF296 48 114 IPR005175 -
Seca10g05040 137 ProSiteProfiles PPC domain profile profile. 43 137 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05040 Seca-Chr10 115888181 115888594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05040 19 136 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 37.815 9.98e-20 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05040 - - rcu:8268528 109.768