Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05039 ATGATAATCAAGGAAGATAACAACCAACATGTTAAACCAACAATCATTGAAATCTCTGCTGGAAATGACATTATTGAGGCCATCATTAAGTTCGTTTCTCGTCATTGTGTCAGTATCTCAGTGCTAAGTTGTTCAGGTTCTGGCTCTAATATTACCCTTTGTCATCCTCTTTCTGATATTGCTCCTCCTCTGTCTTTTACATGA 204 0.3725 MIIKEDNNQHVKPTIIEISAGNDIIEAIIKFVSRHCVSISVLSCSGSGSNITLCHPLSDIAPPLSFT. 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05039 67 SUPERFAMILY AF0104/ALDC/Ptd012-like 10 56 - -
Seca10g05039 67 ProSiteProfiles PPC domain profile profile. 7 67 IPR005175 -
Seca10g05039 67 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 2 58 IPR014476 GO:0003680
Seca10g05039 67 Pfam Plants and Prokaryotes Conserved (PCC) domain 13 52 IPR005175 -
Seca10g05039 67 Gene3D - 7 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05039 Seca-Chr10 115877461 115877664 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05039 1 56 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 39.286 4.76e-09 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05039 - - hsyr:120150414 63.929