Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05038 ATGCCCCGTGGCTCTAAGAACAAACCCAAGCCACCCATGATAATCAAGGAAGATAACAACCAACGTGTTAAACCAACAATCATTGAAATCTCTGCTGGAAATGACATTATTGAGGCCATCATTAAGTTCGTTTCTCGTCATTGTGTCGGTATCTCAGTGCTAAGTTGTTCAGGTTCTGGCTCTAATGTTACCCTTTGTCCTCCTCTTTCTGATATTGCTCCTCCTCTGTCTTTTACTGGAGAATTTAACATTATATCTCTCATGCGTAGTCACATGAGTGATGTTTCTACTCCACTCTCCCGTACCCTTTCTTGTTCCTCCTTTTTCATTAACTTCTCATGGTCACAGAGCAAAGTATTTGGTGGCATTATCGGAGGAAAGGTTGTGGCTGCAGGTTGTGTCGTTGTTGTGGGTTCAATGTTCAAGACGCTTGTGCGCCACAAAGTCGCATCATCAATGGAAGACTAA 468 0.4295 MPRGSKNKPKPPMIIKEDNNQRVKPTIIEISAGNDIIEAIIKFVSRHCVGISVLSCSGSGSNVTLCPPLSDIAPPLSFTGEFNIISLMRSHMSDVSTPLSRTLSCSSFFINFSWSQSKVFGGIIGGKVVAAGCVVVVGSMFKTLVRHKVASSMED. 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05038 155 Pfam Plants and Prokaryotes Conserved (PCC) domain 25 138 IPR005175 -
Seca10g05038 155 Gene3D - 23 153 - -
Seca10g05038 155 SUPERFAMILY AF0104/ALDC/Ptd012-like 22 145 - -
Seca10g05038 155 ProSiteProfiles PPC domain profile profile. 20 155 IPR005175 -
Seca10g05038 155 CDD DUF296 24 126 IPR005175 -
Seca10g05038 155 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 2 149 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05038 Seca-Chr10 115875376 115875843 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05038 2 155 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 34.810 9.05e-27 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05038 - - aew:130771067 119.012