Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05036 ATGAGGACAGAATCTAATAGGAAGAGTGATGGTGTCGAACCCGAAAAATCTAATTCACCTCCTAAACATAATGTTGATTCTGATGAGATTGCTGATGGTCATAAAAAGATATCTGAACTTACAGATGAGGATATCAGAGCTCTTGAGTTTGATTCTGAAGAAGATGGATATGTTTTCTACCGTGAGTATGCAAAATTCATAGGGTTTGCTGTTAGGAAACATAATGTGTACAAAGATCGTAATGATGTAATGACAATGAGACAATTTGTATGTAACAAGGAGGGAGAAAGAAGTGGGAAGCACCTTAATAGGACTGATAGAAAGAGGGAGGCAAACGCCATTACACGAACAAAATGTAATCCAGCCCACAACCATGAATTGACTCCTGCTAGTATGGTTCATTTGATGTCAGCTTATCGTGGGTTGAGTGTAGCTGATAAGGCACAGGTTGACGGTCTACATCATTACAATGTTAGGACTTGCAATATTATGGGGCTTATAATGGGCCAGAAGGGGGGTTATTCTGATCTCGGATTCTGTAAGAAGGATTTGTACAATCACATTGATAAGGTGAAGAGGGCAAAAATTGAGGATGGTGATGCTTTTGCAGCTTTGTGTTACCTTCAGGCAAAGTTTGATAACAATCCACTTACCTTTGTAAAGTTTACAATAACTGAAGATGATAGACTTGAAAACTTGTTTTGGGCTGATATAGGTAGCAGAATTGATTATATTTGTTTTGGGGATGTAGTTGCTTTTGACACAACATACAAGAAAAATAAGTATAACAGACCCTTAGTCATTTTTCCTGGTTATAACCATCATGGTGAAACCACTATTTTTGGTTGTGCTCTGGTTGCGGATGAGAAGACTGAAACATATAAATGGGTCCTTGAAACATTTCTTGAAGCCATGTGCAATAAACTTCCTAAGGCTGTAGTTACTGATGGAGATGGTGCAATGCGTGAAGCTATAAGGGTTGTTTTTCCTGATGCTATTCACAGGCTGTGTGCATGGCACCTTCATCAAAATGCTTGTGAGAATGTTAAGAATCCTAAGTTTCTTGAGGATTTTAAAATCCTAATTTATGGAAATTTCACCCGTGAGAAGTTTGAGAATGAGTGGAACAAAGTTGTTGATAAACATGGCCTGAGGGAAAATAGGTGGGTTAGAAAAATGTATGAGCTGAAGTGGATGTGGGCCACTGCATATTTAAGGGATAATTTTTTTGCTGGGATTAGGACAACTTCTATCTGTGAAGGAATAAACTCTTTCATTAAGAGGTATGTTCAGAGCAAAAATAGCCTTGTGGATTTTCTTCACAATTTTGACAAAGTTGTTAATGAATACAGACACAATGAGTTAACCTCATATTTCAAGTCTACATACACTCAACCCGTGATGACAACTGCATTGGAAAAGTATGAACTTGAAGCTTCTAATTTGTACACGAGGAATAAGTTCTTTGATGTTCGTAAGGAAATCGAGAAAGTTGCTGCCATAAATGTCATTGATAGGTCAGATGTTGGTAATGTAGTTAGAATGAAGATGAATAAATTTGGAAGCCCTGATGTTGAAAATGTTGTTCAGTTAGATAAGTCCAATGGTAATTTGATTTGTGACTGTCGCTTATTTGAATCATGTGGCATCCTATGTTCACATATATTTTGTGCTATGAAGCATGAGCAAATGGAATCCTTTCCTGCATCTTTGATTTGCAAAAGATGGACAAGGTTAGCTAAAGTTGACCACATTTCTGTTGTTTGTGTTGAAGAAGGTGACACATCAAAGAAGGACTTATTGAGGTCTGGTGCTGTTGGTGCTGCATGTAACAGGCTTAACAAGGCTGCTCGTAAAAATCCTCACAACTTCATCAAAAACATTAAATCTATTCATAAGTTAGCTAAACAGATGGAAAAGGAAGAAGGTATTGACTTAAACAACAGTGTTGATATATCAAGAGTAGTGCGTGATCCCACGGTTGTTAAAACCAAAGGTGCTCCTCGAAAGAACAAGAAAAAGAGCAAAAAAAGGAGATGTTCTTATTGTAAGCGTCCAGGGCACACGGTTAGGACATGCAAAAAATATGCCACTTGTGATCAGTTGGATACAGTTCTTGAGGAGCAATCATCTGTTGAGACTGATGAAGAGTCGAGGGACCAAAGTGTAATATGA 2175 0.3779 MRTESNRKSDGVEPEKSNSPPKHNVDSDEIADGHKKISELTDEDIRALEFDSEEDGYVFYREYAKFIGFAVRKHNVYKDRNDVMTMRQFVCNKEGERSGKHLNRTDRKREANAITRTKCNPAHNHELTPASMVHLMSAYRGLSVADKAQVDGLHHYNVRTCNIMGLIMGQKGGYSDLGFCKKDLYNHIDKVKRAKIEDGDAFAALCYLQAKFDNNPLTFVKFTITEDDRLENLFWADIGSRIDYICFGDVVAFDTTYKKNKYNRPLVIFPGYNHHGETTIFGCALVADEKTETYKWVLETFLEAMCNKLPKAVVTDGDGAMREAIRVVFPDAIHRLCAWHLHQNACENVKNPKFLEDFKILIYGNFTREKFENEWNKVVDKHGLRENRWVRKMYELKWMWATAYLRDNFFAGIRTTSICEGINSFIKRYVQSKNSLVDFLHNFDKVVNEYRHNELTSYFKSTYTQPVMTTALEKYELEASNLYTRNKFFDVRKEIEKVAAINVIDRSDVGNVVRMKMNKFGSPDVENVVQLDKSNGNLICDCRLFESCGILCSHIFCAMKHEQMESFPASLICKRWTRLAKVDHISVVCVEEGDTSKKDLLRSGAVGAACNRLNKAARKNPHNFIKNIKSIHKLAKQMEKEEGIDLNNSVDISRVVRDPTVVKTKGAPRKNKKKSKKRRCSYCKRPGHTVRTCKKYATCDQLDTVLEEQSSVETDEESRDQSVI. 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05036 724 SUPERFAMILY Retrovirus zinc finger-like domains 666 697 IPR036875 GO:0003676|GO:0008270
Seca10g05036 724 SMART 26again6 538 565 IPR006564 GO:0008270
Seca10g05036 724 Pfam MULE transposase domain 250 344 IPR018289 -
Seca10g05036 724 Pfam FAR1 DNA-binding domain 59 120 IPR004330 -
Seca10g05036 724 PANTHER OS01G0519700 PROTEIN 45 700 - -
Seca10g05036 724 MobiDBLite consensus disorder prediction 1 35 - -
Seca10g05036 724 ProSiteProfiles Zinc finger SWIM-type profile. 525 563 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05036 Seca-Chr10 115860577 115862810 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca10g05036 MULE 7e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05036 - - tpra:123910662 739.184