Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05035 ATGGCTGAAAATAGGCGTGCACCCTTCTTAGAGCAAAACTCGAAGAATTTCGCCACTCTCTCTGATAACTCCTCACCCTTAGGTGGTTCAAACAAGGGAAACATGGCCCCTCTCTCCAACAACAATTTTTACCTAGTGCCATCACCAACACCACCCTCCCCCTCTAACCGAGAGTTATGTATCATTCCCTGTAAAACCAAGGAGGAGAAGGGCGTAACCACACCCTCCAACTCCAAGGGACGAAAGGGCAGGCCCCGTGGCTCTAAGAATAAACCCAAGCCACCCATCATAATCAAGGAAGATAGCAACCAATGTGTTAAACCAATCATCATTGAAATCTCTACTAGAAATGACATTATTGAGGCCATCATTAAGTTCGCTTCTCGTCATTGTGTCAGTATCTTAGTGATAAGTTGCTCAAGTTCTGGCTCCAATGTTACCCTTTGTCATCATCTTTCTGATATTGCTCCTCCTTTGTCTTTTACTGGAGATTTCAACATTATATCTCTCATGGGTACTCACATCTGTGGTGTTTTTACTCGACTTTCCCGTACCCTTTCTTGTTCCTCCTTTTTCATTAACTTCTCATGA 591 0.4365 MAENRRAPFLEQNSKNFATLSDNSSPLGGSNKGNMAPLSNNNFYLVPSPTPPSPSNRELCIIPCKTKEEKGVTTPSNSKGRKGRPRGSKNKPKPPIIIKEDSNQCVKPIIIEISTRNDIIEAIIKFASRHCVSILVISCSSSGSNVTLCHHLSDIAPPLSFTGDFNIISLMGTHICGVFTRLSRTLSCSSFFINFS. 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05035 196 ProSiteProfiles PPC domain profile profile. 102 196 IPR005175 -
Seca10g05035 196 Pfam Plants and Prokaryotes Conserved (PCC) domain 107 174 IPR005175 -
Seca10g05035 196 MobiDBLite consensus disorder prediction 9 34 - -
Seca10g05035 196 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 69 175 IPR014476 GO:0003680
Seca10g05035 196 SUPERFAMILY AF0104/ALDC/Ptd012-like 105 175 - -
Seca10g05035 196 Gene3D - 106 190 - -
Seca10g05035 196 CDD DUF296 107 173 IPR005175 -
Seca10g05035 196 MobiDBLite consensus disorder prediction 1 34 - -
Seca10g05035 196 MobiDBLite consensus disorder prediction 69 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05035 Seca-Chr10 115854569 115855159 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05035 82 175 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 37.895 3.15e-17 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05035 - - cam:101509190 104.375