Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05034 ATGATCTCTCTCTCCAAACACAATTTTGATCTAGTGCCATCACCAACACCACCCTCCTCCTCTAACCGAGAGTTATGCATCCTTCCTTGCAAAACCAAGGAGGAGAAGGGCGTAACCACACCTTCCAACTCCAAGGGACGAAAGGGCAGTCCATGTGGCTCTAAGAACAAACCCAAGCCACCCATCATAATCAAGGAAGATAGCAACCAACGTGTTAAACAAATAATCATTGAAATCTCTGCTGGAAATGACATTACTGAGGCCATCATTAAGTTCGCTTCTCGTCATTGTGTCGGTATCTCAGTGCTAAGTTGTCCCGGTTCTATCTCTAATGTTACCCTTTGCCATCCACTATCCGATATTGCTCCTCCTTTCTACTTTACAGGAGACTTCAACATTATATCTCTCATCGGTACTTACATCAGTGGTGTTTTTACTCCATTCTCCCGTACCCTTTCTTATTTCTCCTTTTTCATTGACTTCTCAGGATCACAAAGCAAAGTATTTGGTGGGGTTGTTGGAGGAAAGGTTGTGGCCGCAGGTCGTGTGGTGGTTGTGGGTTCAATGTTCAAGAAGCATGAACACCACAAGGTGCGCATCATCAATGGAAGACTAATTGAAGAGGGGGGATTAACATATGGGTCTGCCATTAACGTTGATGCAAGCAACCCTAGTGGCATCACCAACACCATCGCCACTACCAATCCCAATCCCAATGATATGTATGCTTTCAGCATTATAAATTCAACCTCGTATAAACGCCAACTCCTTTCTCCGTAA 780 0.4436 MISLSKHNFDLVPSPTPPSSSNRELCILPCKTKEEKGVTTPSNSKGRKGSPCGSKNKPKPPIIIKEDSNQRVKQIIIEISAGNDITEAIIKFASRHCVGISVLSCPGSISNVTLCHPLSDIAPPFYFTGDFNIISLIGTYISGVFTPFSRTLSYFSFFIDFSGSQSKVFGGVVGGKVVAAGRVVVVGSMFKKHEHHKVRIINGRLIEEGGLTYGSAINVDASNPSGITNTIATTNPNPNDMYAFSIINSTSYKRQLLSP. 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05034 259 MobiDBLite consensus disorder prediction 1 26 - -
Seca10g05034 259 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 36 199 IPR014476 GO:0003680
Seca10g05034 259 Gene3D - 72 201 - -
Seca10g05034 259 MobiDBLite consensus disorder prediction 1 61 - -
Seca10g05034 259 Pfam Plants and Prokaryotes Conserved (PCC) domain 74 187 IPR005175 -
Seca10g05034 259 SUPERFAMILY AF0104/ALDC/Ptd012-like 71 190 - -
Seca10g05034 259 CDD DUF296 75 140 IPR005175 -
Seca10g05034 259 ProSiteProfiles PPC domain profile profile. 68 209 IPR005175 -
Seca10g05034 259 MobiDBLite consensus disorder prediction 36 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05034 Seca-Chr10 115845450 115846229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05034 48 198 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 35.948 6.66e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05034 - - qlo:115982981 111.694