Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05023 ATGACCACCAACAACAATACCACTTTCTTCCCAAGCCAACAACAAATAACCACTTCAGATTTTGTTGAGAGGCAGCAGGACCCTTCTTCTCAGCCTTTAAATCAAGGGATGAATAATATTGAAAGGAAAAAACACTATAGAGGAGTAAGGCAGAGACCATGGGGGAAATGGGCAGCAGAAATAAGAGATCCTAAGAAAGCAGCAAGAGTGTGGCTTGGCACTTTTGACACTGCAGAGGCTGCAGCTGCTGCTTATGATGCTGCTGCTTTGAAGTTCAAAGGAAACAAAGCTAAACTCAATTTCCCTGAACTTGTTGCTAATAATATGGCACTGCCACCATCACCTAATAATAATGCTTCATCAGCTTCTTCTAATTCTGCTCCTCCTCTATTATCATCACAAGGAGGAGAAGGATTTCCAAACCTAATGCAGTATGCTCAAGTGCTTTGTAGTAAAGATGATGATGATCTTCAACGTGCTGCTTCAGGTCTTTACTATCATCATAACAACAATAATAATCCACCGCCATTTTTCTCATCTTCTAATAAGCCTGGAGATCATTTTGCTTCTTATTCTTTTGATTTTGATGAAAGTAACACAAGGGGAGGATCATAG 615 0.4016 MTTNNNTTFFPSQQQITTSDFVERQQDPSSQPLNQGMNNIERKKHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDAAALKFKGNKAKLNFPELVANNMALPPSPNNNASSASSNSAPPLLSSQGGEGFPNLMQYAQVLCSKDDDDLQRAASGLYYHHNNNNNPPPFFSSSNKPGDHFASYSFDFDESNTRGGS. 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05023 204 PANTHER DNA-BINDING DOMAIN 28 151 IPR044808 GO:0003700|GO:0009873
Seca10g05023 204 MobiDBLite consensus disorder prediction 112 136 - -
Seca10g05023 204 Gene3D AP2/ERF domain 44 104 IPR036955 GO:0003700|GO:0006355
Seca10g05023 204 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677
Seca10g05023 204 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Seca10g05023 204 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Seca10g05023 204 CDD AP2 44 104 IPR001471 GO:0003700|GO:0006355
Seca10g05023 204 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Seca10g05023 204 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Seca10g05023 204 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Seca10g05023 204 FunFam Ethylene-responsive transcription factor 2 44 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05023 Seca-Chr10 115671969 115673984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05023 26 165 AP2-EREBP Transcription Factor Family AT5G13330 47.771 5.22e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca10g05023 AP2 6.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05023 - - gmx:100806383 189.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05023 10 115671969 115673984 Seca4g01801 4 29658690 29660762 ECH
Seca10g05023 10 115671969 115673984 Seca10g05023 10 115671969 115673984 ECH
Seca4g01801 4 29658690 29660762 Seca10g05023 10 115671969 115673984 ECH
Seca10g05023 10 115671969 115673984 Seca10g03598 10 67512391 67514152 PCT
Seca2g03387 2 104489225 104491764 Seca10g05023 10 115671969 115673984 PCT