Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05021 ATGCAACCTTCTGCACCTTCCTTCACTTTCGACCCTTCCTCATCACAAACACAGTCATTTCTGAAACCTTGTTTCTCTTCTTTCTTCAATGCTAACGGTGGCGGCAGCAGCAACAACAACAACAACCCTTTTGAGAATGGCTTTGATTTGGGCTCGCATGCTGGTTTCCTCGCTTCAAATTCCTCTGTTTTGATGGGTTTCTCGCCCCAAATGGGCTCCACCCTCGAGCTGAATTCCAACGCCGAGTTCACTCAGACTCGTGCGGTTGAACTCAGTAGTGGTTTTGCTCCAATGGGTGTAGGAGAAGAGCAAGGCTTTGATGGTTCTGGGTCTTCAAATGCTCTGTTTTCGAGCAAGACAAAGGTTTTGCCGCCGGTGGGTGCGCCGCCAACTCTGTTCCAGAAACGGGCGGCGCGTTCTGGCTCCGGTGGTGGGGCTGATAAGGTGGGAGGGTTGATGGTTTCACCGCCGCCGCGGTTCACCGGATTTTCAGTTGGGGTGGAGGAGTTGGAGAAGAGGAGGGAGAGAGGAGAAGAGGAAGAGGTTGAGGAAGGGTTGAATTATGACTCTGATGAGGTAATTGAGATTGGAAAGATGGAGGAGAATGCAAATAACAATGATACTGATAATGGTGTCATTGGTGGAAAGCAGAAAGGGAAGAAGAAAGGGATGCCAGCGAAGAATCTCATGGCTGAGAGGAGGCGTAGGAAGAAACTCAATGATAGGTTGTACATGCTTCGCTCTGTTGTGCCAAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCAATTGACTACTTGAAGGAGTTACTGCAGCGGATTAATGATCTTCACAATGAGCTAGATTCAAGCTCAGCTGCCTCATCTTTGCCAACTCCTACAAATTTTCACCCTGGGCCACCCACTCCGACAACCCTTCCTTGCCGGGTTAAGGAAGAGCTATCTCCTAGCACTGTTCCAAGCCCTAAGAACCAATCAGCAAAGGTAGAGGTTATGATTAGGGAAGGGAGAGCTGTCAATATCCATATGTTTTGCGCCCGCAGACCAGGTCTCTTGGTTTCCACCATGAAGGCAATGGATAAGCTCGGATTGGACATTCAGCAGGCTGTTATCAGCTGTTTCAATGGGTTTTCTTTAGATGTGTTTAGAGCTGAGCAGCAATGCAAAGAAGGCCAGGATGTCCTCCCTGAGCAAATTAAAGCAGTACTGTTGGATATAGCGACTTTCCATGGTATGATGTGA 1248 0.4848 MQPSAPSFTFDPSSSQTQSFLKPCFSSFFNANGGGSSNNNNNPFENGFDLGSHAGFLASNSSVLMGFSPQMGSTLELNSNAEFTQTRAVELSSGFAPMGVGEEQGFDGSGSSNALFSSKTKVLPPVGAPPTLFQKRAARSGSGGGADKVGGLMVSPPPRFTGFSVGVEELEKRRERGEEEEVEEGLNYDSDEVIEIGKMEENANNNDTDNGVIGGKQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELDSSSAASSLPTPTNFHPGPPTPTTLPCRVKEELSPSTVPSPKNQSAKVEVMIREGRAVNIHMFCARRPGLLVSTMKAMDKLGLDIQQAVISCFNGFSLDVFRAEQQCKEGQDVLPEQIKAVLLDIATFHGMM. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05021 415 MobiDBLite consensus disorder prediction 285 309 - -
Seca10g05021 415 SMART finulus 229 278 IPR011598 GO:0046983
Seca10g05021 415 CDD ACT_UUR-ACR-like 343 404 - -
Seca10g05021 415 CDD bHLH_AtAMS_like 226 296 - -
Seca10g05021 415 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 226 298 IPR036638 GO:0046983
Seca10g05021 415 Coils Coil 269 289 - -
Seca10g05021 415 FunFam BHLH transcription factor 219 287 - -
Seca10g05021 415 Pfam Helix-loop-helix DNA-binding domain 230 272 IPR011598 GO:0046983
Seca10g05021 415 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 90 410 - -
Seca10g05021 415 MobiDBLite consensus disorder prediction 202 226 - -
Seca10g05021 415 Gene3D - 216 288 IPR036638 GO:0046983
Seca10g05021 415 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 223 272 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05021 Seca-Chr10 115559057 115562947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05021 7 387 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 53.941 3.38e-112 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca10g05021 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05021 - - csav:115700779 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05021 10 115559057 115562947 Seca10g05021 10 115559057 115562947 ECH
Seca10g05021 10 115559057 115562947 Seca2g03359 2 102969918 102976257 PCT