Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05013 ATGTCAAGTGAGGACTCTGTTCATTTTGCTAATACTCATCGCAATGAAGTAATAGCAATCGGTGTATTAATCCCTCTTTTCATAGGATGTTTATTATGCTTTTTTTGTTTTTTGAGAAAAATAGATTCACCTCATCGAGAATTACGGGAGAGAGCAGTTGAGTTCTCTAACAACTCAACCAATCCTCTCCCACACAATCAAACAAATTGTTTAATATGTTTGGAAAATTTTGAAAATAATCAAAAACTTTTTACTTTACCTTGTGGCCACACATTTCATGAGAATTGTGTCTCTACATATTTATCACGAAGTAAAATATGTCCACTTTGTAGACAAAAGATTTTAGCTTAA 351 0.3219 MSSEDSVHFANTHRNEVIAIGVLIPLFIGCLLCFFCFLRKIDSPHRELRERAVEFSNNSTNPLPHNQTNCLICLENFENNQKLFTLPCGHTFHENCVSTYLSRSKICPLCRQKILA. 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05013 116 SMART ring_2 70 110 IPR001841 -
Seca10g05013 116 Pfam Ring finger domain 69 111 IPR001841 -
Seca10g05013 116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 115 IPR013083 -
Seca10g05013 116 ProSiteProfiles Zinc finger RING-type profile. 70 111 IPR001841 -
Seca10g05013 116 SUPERFAMILY RING/U-box 69 114 - -
Seca10g05013 116 PANTHER SI:CH211-59O9.10 62 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05013 Seca-Chr10 115426515 115426865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05013 66 111 C3H Transcription Factor Family AT1G21960 43.478 6.37e-11 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05013 - K15695 ptm:GSPATT00006085001 67.3958