Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05012 ATGGATACCCCACGCCCCCATTCTCTGATTCCGAGCTACCTTTACTCATCATCCTCTTTGCCACAGAAGAAGAAGAAGATGGTGGTGGCAGCAGGAGAAGCAGCACCTTTGAATTTGATAATTGGTGCTCCGAGCGAGGGTGGCTATAATATCAAGATGTATTCGCCAGCACATTATGCTGCTTGTGCCGTTGGTGGAAGCCTCTGTTGTGGACTCACTCACATGGCTGTTACACCTCTTGACCTTGTCAAATGTAATATGCAGATTGACCCTGCCAAGTACAAGAGCACCTCCTCTGCATTTGGAGTTATGCTTAAGGAGCAAGGCTTCAGGGGCTTTTTCAGAGGATGGGTACCTACCTTTCTCGGTTATAGTGCACAGGGTGCTTGCAAATATGGGCTCTATGAGGTCTTCAAGAAGCAGTATTCTGATATTGCTGGCCCTGAGTATGCAACCAAGTACAAGACCTTGATCTACCTTGCTGGTTCAGCATCTGCTGAGGTTATTGCAGATGTTGCACTTTGCCCATTTGAGGCCGTGAAGGTCAGAGTTCAAACTCAGCCTGGTTTTGCTAGAGGCCTTGCTGATGGGTTACCAAAATTGGTCAAATCTGAAGGAGTCTCAGGGCTATACAAGGGAATTGTGCCTCTGTGGGGAAGACAGGTTCCATGTAAGTTGGCTATATTATACTTTGTAGATACAATGATGAAGTTTGCTTCTTTTGAGAACATTGTTGAGATGATCTATAAACATGCCATCCCCACAGGAAAAGAGGATTGCAGCAAAACCCAACAACTAGGTGTGAGTTTTGTTGGTGGATACATAGCTGGTATATTATGTGCAGTTGTGTCTCATCCTGCTGATAACCTTGTCTCTTTCCTGAACAATGCCAAAGGGGCAACGGTTGGTGATGCTGTAAAGAACCTTGGGTTATGGGGTCTATTTACCCGTGGTCTCCCTCTGCGTGTTCTGATGATTGGAACTCTCACTGGAGCTCAATGGGGAATTTATGATGCATTCAAAGTTTTTGTGGGGCTGCCAACCACTGGTGGGGTTGCTCCTACTGCTGTTCCTGCTTCAGCTACTTAG 1089 0.4637 MDTPRPHSLIPSYLYSSSSLPQKKKKMVVAAGEAAPLNLIIGAPSEGGYNIKMYSPAHYAACAVGGSLCCGLTHMAVTPLDLVKCNMQIDPAKYKSTSSAFGVMLKEQGFRGFFRGWVPTFLGYSAQGACKYGLYEVFKKQYSDIAGPEYATKYKTLIYLAGSASAEVIADVALCPFEAVKVRVQTQPGFARGLADGLPKLVKSEGVSGLYKGIVPLWGRQVPCKLAILYFVDTMMKFASFENIVEMIYKHAIPTGKEDCSKTQQLGVSFVGGYIAGILCAVVSHPADNLVSFLNNAKGATVGDAVKNLGLWGLFTRGLPLRVLMIGTLTGAQWGIYDAFKVFVGLPTTGGVAPTAVPASAT. 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05012 362 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 46 354 IPR044677 GO:0005315|GO:1990547
Seca10g05012 362 FunFam Phosphate carrier protein, mitochondrial 57 344 - -
Seca10g05012 362 SUPERFAMILY Mitochondrial carrier 58 339 IPR023395 -
Seca10g05012 362 ProSiteProfiles Solute carrier (Solcar) repeat profile. 154 238 IPR018108 -
Seca10g05012 362 Gene3D Mitochondrial carrier domain 57 344 IPR023395 -
Seca10g05012 362 ProSiteProfiles Solute carrier (Solcar) repeat profile. 264 343 IPR018108 -
Seca10g05012 362 ProSiteProfiles Solute carrier (Solcar) repeat profile. 57 141 IPR018108 -
Seca10g05012 362 Pfam Mitochondrial carrier protein 157 239 IPR018108 -
Seca10g05012 362 Pfam Mitochondrial carrier protein 58 142 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05012 Seca-Chr10 115386855 115390613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05012 1 354 Chloroplast and Mitochondria Gene Families AT5G14040 70.053 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05012 K15102 - twl:119993760 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05012 10 115386855 115390613 Seca10g05012 10 115386855 115390613 ECH
Seca10g05012 10 115386855 115390613 Seca2g03345 2 102413399 102417690 PCT