Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05010 ATGGCGACAAGGTACTGGGTTGTCTCTCTTCCCGTTCAAAATTCCGCATCCACTCTCTGGAACCGATTGCAGGAACAAATCTCCAAGCATTCCTTCGATACTCCTCTTTACAGATTCAACATTCCCAATCTCCGCGTTGGAACGCTAGACTCTCTCCTCTCTCTAAGCGATGATCTTGTCAAGTCGAACAGTTTCATGGAAGGAGTGTCGCACAAGATCAGGCGCCAGATTGAGGAATTGGAGAGGGTCTCAGGCGTGATGAGCAGCGGGTTGACGGTGGATGGGGTGCCTGTTGATTCTTACTTGACGAGGTTTGTTTGGGATGAAGCGAAGTACCCAACTATGTCGCCGTTGAAGGAGATCGTGGATGGGATTCATGGTCAGGTTGCAAAGATTGAGGATGATCTCAAGGTCCGTGTTTCTGAATTCAACAATATCCGCAGTCAGCTTAATGCAATCAACCGAAAGCAAAGTGGAAGCTTAGCTGTCCGTGATCTTTCAAACTTGGTAAAGGCTGAGGATATTATAACTTCCGAACATTTAACTACCCTTCTAGCAGTTGTTCCCAAGTATTCACAGAAAGATTGGGTGTCAAGCTATGAAACATTGACAAGCTATGTGGTTCCCAGGTCTTCCAAGAAGTTGTATGAGGATAACGAATATGCTCTTTATACTGTAACACTCTTCAACCGTGTTGCAGACAATTTTAGAACTAGTGCACGGGAGAAAGGGTTCCAAATTCGTGATTTTGAATACAGTCCAGAATCACATGAGAGTCGGAAGCAGGAGTTAGAGAAATTGGTGGAAGATCAGGAAAGTTTGAGGGATTCTCTGTTGCAATGGTGTTATACCAGTTATGGAGAGCCCCTGCTGGCATTATGGAGTGGTCCTTAG 894 0.4541 MATRYWVVSLPVQNSASTLWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLVKSNSFMEGVSHKIRRQIEELERVSGVMSSGLTVDGVPVDSYLTRFVWDEAKYPTMSPLKEIVDGIHGQVAKIEDDLKVRVSEFNNIRSQLNAINRKQSGSLAVRDLSNLVKAEDIITSEHLTTLLAVVPKYSQKDWVSSYETLTSYVVPRSSKKLYEDNEYALYTVTLFNRVADNFRTSAREKGFQIRDFEYSPESHESRKQELEKLVEDQESLRDSLLQWCYTSYGEPLLALWSGP. 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05010 297 Gene3D Vacuolar atp synthase subunit c; domain 1 5 40 - -
Seca10g05010 297 SUPERFAMILY Vacuolar ATP synthase subunit C 1 292 IPR036132 GO:0015078|GO:0033180|GO:1902600
Seca10g05010 297 CDD V-ATPase_C 5 294 IPR004907 GO:0033180|GO:0046961|GO:1902600
Seca10g05010 297 Gene3D - 41 291 - -
Seca10g05010 297 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 2 292 IPR004907 GO:0033180|GO:0046961|GO:1902600
Seca10g05010 297 Gene3D - 163 251 - -
Seca10g05010 297 Pfam V-ATPase subunit C 5 291 IPR004907 GO:0033180|GO:0046961|GO:1902600
Seca10g05010 297 FunFam V-type proton ATPase subunit C 163 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05010 Seca-Chr10 115367619 115374735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05010 1 288 Primary Pumps ATPases(2) AT1G12840 85.069 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05010 K02148 - gmx:100803728 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05010 10 115367619 115374735 Seca10g05010 10 115367619 115374735 ECH