Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05001 ATGGCTACCAACACACTGATGAGCTCTGCTATCACAGCCTTCCCTTCTCTTCTTTCTTCCTCAAAATCCAAATTTGCCTCTGCAGTTCCACTTTCCTGCTTTGGTTCCAATGCCTCTTCTCGCTTCACCATGACTGCTGACTGGATGCCAGGCCAGCCTAGACCCCCTTACCTTGATGGCTCTGCTCCTGGTGACTTTGGATTCGACCCTCTTCGTCTTGGTGAAGTGCCAGAGAATCTTGAGAGATTCAAGGAGTCAGAACTCATTCACTGCAGATGGGCCATGCTTGCTGTTCCAGGGATTTTGGTACCAGAGGCATTGGGCTTAGGCAATTGGGTAAAAGCTCAGGAATGGGCAGCAGTTCCTGGGGGCCAAGCAACCTACCTAGGAAACCCTGTTCCATGGGGCACCCTCCCAACCATTCTTGTCATTGAATTCCTTTCTATTGCATTTGTGGAGCACCAGAGGAGCATGGAGAAAGACCCAGAGAAGAAGAAATACCCTGGTGGTGCTTTTGATCCTTTGGGATACTCTAAGGACCCTAAAAAGTTCCATGAATACAAAGTTAAAGAAATTAAGAATGGACGTCTTGCTCTTTTGGCTTTTGTGGGGTTCTGTGTTCAACAATCAGCTTATCCTGGCACTGGACCTTTGGAGAACTTGGCTACTCACTTGGCTGACCCATGGCACAACAACATTGGGAATATCATTATTCCCCAATAG 723 0.4786 MATNTLMSSAITAFPSLLSSSKSKFASAVPLSCFGSNASSRFTMTADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGNIIIPQ. 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05001 240 Gene3D Chlorophyll a/b binding protein domain 49 235 - -
Seca10g05001 240 FunFam Chlorophyll a-b binding protein, chloroplastic 49 235 - -
Seca10g05001 240 Pfam Chlorophyll A-B binding protein 55 209 IPR022796 -
Seca10g05001 240 SUPERFAMILY Chlorophyll a-b binding protein 38 237 - -
Seca10g05001 240 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 44 235 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05001 Seca-Chr10 115279225 115281641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05001 1 196 Chloroplast and Mitochondria Gene Families AT3G54890 82.828 6.29e-108 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05001 K08907 - gmx:100305992 459.914