Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04996 ATGGTGAAGAACCCTAATAAAAAAAGAGCCCTCTGCCAGCAGCTCCGTTCTCCTTCGCCAGCGACGTCGCAGCAGCTCCGTTCACGCGCAGCAGCTGTTCTTCCTCGCAGTGGAAGCATTTGCTTTTGCTGCCGGCGACGCTTCAAGCTCGCCGTGTCGGAGGCCCCGCCGGAGATAAGGGACCTTTTCCAGCGCTACTCTGATGAGAATGGGACAACTTCTCATCTACACAATTTCCTCGTTGAGGTAAGCTTCACTGGTTTAACACAAATAGGCCGTGAGATAATGAAGGTTGCAACTAGCAGTAACTTGAAAAGAGTTTCACTTGAATTAGGAGGCAAATCACCCCTCATAATTTTTGATGATGCTGATATAGTCAAAGCTGCTGAGCTTGCTCTATTTGGCCTCCTATTTAACAAGGTGAAATTACTTTCAAGAGATCCTTTCTTTTCAAACAACATCCCCTGTTATGTCTCTGCCAAGATTTTATTTCTCTTTTGTGACTACAGGGATAAGTCTGTGTTGCAAATCATTGCAATCTCAGATATTTTACCGCAAGCAATTGTAATGGGTATTATCAGGAGTTGCTTCTCTTTCATAGCAGGGACAGTCATTAGGGTTTACTTGGCTCAGAACTATCAAATTCTTAACCTCAGGAAGCTAGCTGACACTGCCTTGATCGAGAAGAAGGTGCTGATGATGATAACTACGATTAGAATATCTATGACACTACATTGGAATCAGGCCTTTGAGCTATCTATTCTTTGTGATGCTGAGGTTGCTTTTATCATCTTCTCTCCAATCGGAAAGCTTTATGAATTTGCAAGCTCCAGGTAA 837 0.4373 MVKNPNKKRALCQQLRSPSPATSQQLRSRAAAVLPRSGSICFCCRRRFKLAVSEAPPEIRDLFQRYSDENGTTSHLHNFLVEVSFTGLTQIGREIMKVATSSNLKRVSLELGGKSPLIIFDDADIVKAAELALFGLLFNKVKLLSRDPFFSNNIPCYVSAKILFLFCDYRDKSVLQIIAISDILPQAIVMGIIRSCFSFIAGTVIRVYLAQNYQILNLRKLADTALIEKKVLMMITTIRISMTLHWNQAFELSILCDAEVAFIIFSPIGKLYEFASSR. 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04996 278 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 56 141 - -
Seca10g04996 278 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 249 274 IPR002100 GO:0003677|GO:0046983
Seca10g04996 278 MobiDBLite consensus disorder prediction 1 20 - -
Seca10g04996 278 SUPERFAMILY ALDH-like 32 139 IPR016161 GO:0016491
Seca10g04996 278 ProSiteProfiles MADS-box domain profile. 248 278 IPR002100 GO:0003677|GO:0046983
Seca10g04996 278 Pfam Domain of unknown function (DUF4535) 195 228 IPR027854 -
Seca10g04996 278 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 115 140 IPR016163 GO:0016620
Seca10g04996 278 Gene3D - 237 278 IPR036879 GO:0003677|GO:0046983
Seca10g04996 278 Pfam Aldehyde dehydrogenase family 56 139 IPR015590 GO:0016491
Seca10g04996 278 SUPERFAMILY SRF-like 248 277 IPR036879 GO:0003677|GO:0046983
Seca10g04996 278 SMART madsneu2 233 277 IPR002100 GO:0003677|GO:0046983
Seca10g04996 278 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 55 114 IPR016162 GO:0016491
Seca10g04996 278 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 109 116 IPR029510 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04996 Seca-Chr10 115206350 115208839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04996 56 143 Aldehyde Dehydrogenase Gene Family AT3G24503 50.000 1.05e-20 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca10g04996 Aldedh 1.8e-16 CL0099
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04996 K12355 - gmx:100791396 96.2857