Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04984 ATGGGGAGGAAAGGGAGTTGGTTTTCTGCAGTGAAGAAGGTTTTTAGTTCAGATTCCAGAAAAGATAAGAAAAGCCACAAGTCAAAGAAAAAATGTACTCAGAAGGATTCAGAATTGGCATCTGAAGAAGCACTAGTTGCTGTTGCTCCCACTCTTCCACCAATAGATGTTAAATTAACTGAGGCAGAGAATGAACAGAGCAAACGTGCTTTTTCTTTGGCTTTTGCCACTGCTGTCGCCGCAGAGGCTGCTGTTGCTGCTGCTCAGGCTGCTGCAGAGGTTGTTCGTCTCACAAGTATGCCTCATTACACTGGAAAGACAAAGGAAGAAATAGCAGCTATCAAGATTCAGACGGCATTCCGCGGATATTTGGCAAGAAGGGCATTGCGTGCCTTGAGAGGTTTGGTGAGGTTGAAAACATTAATACAAGGGCAATCTGTTCAACGGCAAGCAACTAGTACCTTAAGATGCATGCAAACTCTAGCAAGACTGCAGTCTCAGGTTCGTGAAAGGAGAATTAGAATGTCTGAGGAGAACCAGGCTCTTCAGCGGCAACTACAGCAGAAACATGAAAAAGAACTTGAGAAATTGCGAGCTGCTGTTGGAGAAGAATGGGATGATAGCTTGCAGTCAAAGGAGCAAATTGACGCAAAATTGTTGCACAGGCAAGAGGCTGCTTTGAGAAGAGAGAGGGCTTTGGCCTATTCATTCTCACATCAGCAAACATGGAAGAACTCTTCAAAATCAGTAAATCCCACATTTATGGACCCAAAGAATCCTCACTGGGGCTGGAGTTGGTTAGAGAGATGGATGGCTGCCAGGCCATGGGAGGGTATGGATCACAATGATCATGCATCTGTTAAGAATGCAGCAAGCCATGCCACCATGTCTATTGGGGAAATAACAAAATCACATTCTCTCCGTGAATATAAATATAATCATGACAGTAAACCTTCCCCTGTTGGCCAAAAAGCAAGAAGACCTGCTGCCACTCACAATTCTCCTTCAACCCCGGCTTCGAAGGCCCCATCTTCATCATCTGTTAATGGAAAAGCAAGGCCATCAAGCTCCAAGGGTAGTGCCTGGGGTGTGGATGATGACTCAAGAAGCATGTTTAGCATTCAGTCGGAACGTTATCATCGCAGATATAGCATTGCAGGATCATCATCAATGAGAGATGATGAGAGCCTTGCTAGCTCACCAGCCTTTCCAAGTTACATGGCTCTCACAAGTTCAGCAAAAGCCAGGTCCAAAATGCAAAGACCATCACCATCTAGTATAGATAGAAATGGTCATGGAACACCAGGAGCAAAGAAGAGGCTTTCTTTCCCTGCTTCTCCAGCTAGTTCAAGAAGGCATTCTGGTCCTCCTAAGGTGGAAATGCTTTCCAACAAGGATGTTGCTACTGTCACATTAAGCAATGGAGGTAGCAGGTGTAATTATCTGCTCGTACTTGCTCTTTGGAACTTACCTGCATTTTTTGGTTGGGCTACACCATTTCTAGCTGGCCTTGCTGTAGCTGCTGCAGCGCTTGCTGGCAAGCATGGCATCAAAGCATGGCAAGCATTCAAGGCTCGACCTCCAAAACCCAGAATACGTAAGTTCTATGAAGGTGGTTTCCAGCCTACAATGACAAGGAGAGAGGCGGCTCTAATATTAGGCATCAGGGAAAATGCAACTCCAGACAAGGTGAAGGAAGCACATAGAAAGGTAATGGTTGCAAACCATCCTGATGCAGGTGGAAGTCATTATCTTGCTTCCAAAATAAATGAGGCCAAAGATGTTATGCTTGGGAAGACAAAGGGAAGCGGTTCTGCATTTTGA 1824 0.4529 MGRKGSWFSAVKKVFSSDSRKDKKSHKSKKKCTQKDSELASEEALVAVAPTLPPIDVKLTEAENEQSKRAFSLAFATAVAAEAAVAAAQAAAEVVRLTSMPHYTGKTKEEIAAIKIQTAFRGYLARRALRALRGLVRLKTLIQGQSVQRQATSTLRCMQTLARLQSQVRERRIRMSEENQALQRQLQQKHEKELEKLRAAVGEEWDDSLQSKEQIDAKLLHRQEAALRRERALAYSFSHQQTWKNSSKSVNPTFMDPKNPHWGWSWLERWMAARPWEGMDHNDHASVKNAASHATMSIGEITKSHSLREYKYNHDSKPSPVGQKARRPAATHNSPSTPASKAPSSSSVNGKARPSSSKGSAWGVDDDSRSMFSIQSERYHRRYSIAGSSSMRDDESLASSPAFPSYMALTSSAKARSKMQRPSPSSIDRNGHGTPGAKKRLSFPASPASSRRHSGPPKVEMLSNKDVATVTLSNGGSRCNYLLVLALWNLPAFFGWATPFLAGLAVAAAALAGKHGIKAWQAFKARPPKPRIRKFYEGGFQPTMTRREAALILGIRENATPDKVKEAHRKVMVANHPDAGGSHYLASKINEAKDVMLGKTKGSGSAF. 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04984 607 MobiDBLite consensus disorder prediction 411 430 - -
Seca10g04984 607 Pfam IQ calmodulin-binding motif 112 130 IPR000048 GO:0005515
Seca10g04984 607 MobiDBLite consensus disorder prediction 329 356 - -
Seca10g04984 607 CDD DnaJ 552 595 IPR001623 -
Seca10g04984 607 MobiDBLite consensus disorder prediction 15 37 - -
Seca10g04984 607 ProSiteProfiles IQ motif profile. 109 137 IPR000048 GO:0005515
Seca10g04984 607 FunFam Import inner membrane translocase subunit tim14 534 600 - -
Seca10g04984 607 SMART dnaj_3 547 601 IPR001623 -
Seca10g04984 607 SMART iq_5 108 130 IPR000048 GO:0005515
Seca10g04984 607 Gene3D DnaJ domain 534 600 IPR036869 -
Seca10g04984 607 SUPERFAMILY Chaperone J-domain 538 599 IPR036869 -
Seca10g04984 607 ProSiteProfiles dnaJ domain profile. 548 601 IPR001623 -
Seca10g04984 607 Gene3D - 66 135 - -
Seca10g04984 607 Coils Coil 165 195 - -
Seca10g04984 607 PANTHER IQ-DOMAIN 5-RELATED 1 456 - -
Seca10g04984 607 MobiDBLite consensus disorder prediction 411 460 - -
Seca10g04984 607 MobiDBLite consensus disorder prediction 311 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04984 Seca-Chr10 114839833 114849242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04984 1 475 IQD Protein Family AT5G03040 48.269 7.78e-129 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04984 - - lja:Lj0g3v0301539.1 576.63