Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04979 ATGGGATCAGAAACTTTTCTCGAAGTGATATTAGCAATACTGCTACCACCTGTTGGTGTTTTCCTTCGTTATGGCTGTGGAGTTGAGTTCTGGATAGATCTGGTGCTGACTATAGTGGGATACATACCAGGGATTATATATGCAATTTATGTATTGGTTGGATGA 165 0.4 MGSETFLEVILAILLPPVGVFLRYGCGVEFWIDLVLTIVGYIPGIIYAIYVLVG. 55
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04979 54 Pfam Proteolipid membrane potential modulator 6 53 IPR000612 GO:0016020
Seca10g04979 54 PANTHER HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED 2 53 IPR000612 GO:0016020
Seca10g04979 54 ProSitePatterns Uncharacterized protein family UPF0057 signature. 10 25 IPR000612 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04979 Seca-Chr10 114689854 114690565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04979 1 54 RCI2 Gene Family AT2G38905 92.593 2.38e-29 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04979 - - gmx:100789888 110.538