Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04959 ATGATGTTACCTCAAACAGTAGCTATCCCTGCATTACTCCTTGTTATATTCATACTCCTTCTATCAGCCACTGTGCTTCATTTTCATCCAAAATGGTATCAATATGATGGGAAAAAACATCCAATTCCACCAGGTCCCAAGGCCTTACCAATTATTGGTAACCTCCACATGCTAGGAAAACTCCCACATCGAACCCTTCAATCTCTTGCCAAAAAATATGGACCCATAATGTCCTTAAAGCTAGGACAGATCCCAACCATTGTTGTTTCCTCCCCTGAATCTGCTGAGCTATTCCTCAAGACCCATGACACTGTTTTCAGTAGTAGGCCCAAAACTTTTGCCTCAAACTACATATCTTATGGCAACAAGGGCTTAGTGTTCACTGAGTATGGTGACTACTGGCGCAATGTGAGGAAATTGTGTACTATACAACTCCTACATTCATCAAAAGTTGAGATGTTTGCTCCTTTGAGGAAAGAGGAGTTGAGATTGTCGGTGAAGTCACTCCAAAAAGCAGCAACCTCACATGAGGTTGTGGACATCCACAACATTGTGGCAGAGCTTATAGAGAATATCACATATAAAATGATATTGGGACGCAGTAAGGACCAAAGATTTGACTTAAAGGGCCTTGTTCATGAGGCACTCAAGTTGAATGCAGCTTTTAATCTTGCAGATTATGTGCCTTGGCTTGGTGTTTTTGATCTTCAGGGACTAGCAAAACGATTAAAGAAAACAAGGAAGGAATTTGATGAATTGTTGGAGCACATCATCAAAGAGCATGAGCATCCATCAGGTACAGTGGATTCCCAGGAGGAACAAAAATATGTGGTTGATAGAACTAACATCAAGGCAATTATAATAGATATGATTGCAGCAACATTAGATACATCAGCAGCTGCAATTGAGTGGGCTCTTTCAGAACTCCTCAAGAATCCAAGAGCTATGAAGAGGCTTCAAGATGAGCTAGAAAGTGTGGTTGGGATGAATAGACAGGTGGAAGAGAATGACTTAGCAAAGTTGCCTTACTTGAATATGGTAGTGAAAGAGACCTTAAGGCTATATCCTGTTGGACCTTTGTTAGTACCTCATCAGTGTCTTAAAGATGTTATTGTTGATGGTTATTACATAAAGAAAAATTCAAGGATCATCATAAATGCATGGGAAATAGGGAGAGATCCTAAAGTTTGGTCAGATAATGCTGAAATGTTTTGTCCAGAGAGATTTGAAGATAGCAATGTAGACATTAGGGGACATGATTTTCATCTCATACCATTTGGTGCAGGTCGCAGAGGATGTCCTGGAATTCAATTGGGTCTAACTACTGTGAAACTTGCTCTGGCTCAGTTAGTGCATTGCTTCAATTGGGAGCTTCCAGGGGGAATGTCACCTGGTGACTTAGACATGTCTGAAAAGTTTGATCTCTCCATGCCAAGAAGTCAAAACTTGCTTGCTGTGCCAACTTATCGCCTGCTTAATTAG 1482 0.4076 MMLPQTVAIPALLLVIFILLLSATVLHFHPKWYQYDGKKHPIPPGPKALPIIGNLHMLGKLPHRTLQSLAKKYGPIMSLKLGQIPTIVVSSPESAELFLKTHDTVFSSRPKTFASNYISYGNKGLVFTEYGDYWRNVRKLCTIQLLHSSKVEMFAPLRKEELRLSVKSLQKAATSHEVVDIHNIVAELIENITYKMILGRSKDQRFDLKGLVHEALKLNAAFNLADYVPWLGVFDLQGLAKRLKKTRKEFDELLEHIIKEHEHPSGTVDSQEEQKYVVDRTNIKAIIIDMIAATLDTSAAAIEWALSELLKNPRAMKRLQDELESVVGMNRQVEENDLAKLPYLNMVVKETLRLYPVGPLLVPHQCLKDVIVDGYYIKKNSRIIINAWEIGRDPKVWSDNAEMFCPERFEDSNVDIRGHDFHLIPFGAGRRGCPGIQLGLTTVKLALAQLVHCFNWELPGGMSPGDLDMSEKFDLSMPRSQNLLAVPTYRLLN. 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04959 493 Coils Coil 236 260 - -
Seca10g04959 493 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 426 435 IPR017972 GO:0005506|GO:0016705
Seca10g04959 493 PRINTS E-class P450 group I signature 302 328 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g04959 493 PRINTS E-class P450 group I signature 282 299 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g04959 493 PRINTS E-class P450 group I signature 70 89 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g04959 493 PRINTS E-class P450 group I signature 433 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g04959 493 PRINTS E-class P450 group I signature 345 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g04959 493 PRINTS E-class P450 group I signature 94 115 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g04959 493 PRINTS E-class P450 group I signature 386 410 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g04959 493 PRINTS E-class P450 group I signature 423 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g04959 493 Pfam Cytochrome P450 43 481 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g04959 493 Coils Coil 316 336 - -
Seca10g04959 493 PANTHER CYTOCHROME P450 93A3-LIKE 19 491 - -
Seca10g04959 493 CDD CYP71-like 72 483 - -
Seca10g04959 493 FunFam Cytochrome P450 83B1 31 486 - -
Seca10g04959 493 Gene3D Cytochrome P450 31 486 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g04959 493 PRINTS P450 superfamily signature 424 433 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g04959 493 PRINTS P450 superfamily signature 433 444 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g04959 493 PRINTS P450 superfamily signature 346 357 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g04959 493 PRINTS P450 superfamily signature 293 310 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca10g04959 493 SUPERFAMILY Cytochrome P450 43 490 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04959 Seca-Chr10 114218522 114220999 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04959 49 492 Monolignol Biosynthesis Gene Families AT4G36220 40.756 1.50e-124 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04959 - - gmx:100782181 686.411