Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04937 ATGATCAAAGAAATGAAAGGTGCAAGTGCATTAGGAGCCAAGACAGCAAGAGCTTGTGATAGCTGCTTAAGGGTAAGAGCAAGGTGGTATTGTGCAGCTGATGATGCTTTCCTTTGCCATGGTTGTGATAACTTGGTTCATTCTGCAAACCAATTAGCAAGCAGGCATGAAAGGGTTAGGCTTCAAACTGCTTCCTCTAAGGTCAATTACTCATTGACCACTGATAAGGTAAACTCACAGTCACAAGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCACGTCATAACAAACAACAACAACAACACAAAGATATTGAAGTAGAAGCAGAAGGAGTGGTTTTCAACAACACAAACACCCTTCCTCTTGTGCCAGAGTTAGGAAGTGAAGAACCACTTCTTGATGATGAGACTGATCAGGAGCAACTTCTCTGCCGCGTGCCTGTGTTTGATCCATTTGATGAAGGGTTCTGCAGTATATACAATGAAGTGAAGGATGAGACCATGAAAAACAATGATGTTGTTGTTGCTGGTGGTGGTGGTGGTGGTGAAGAAGAAGAAGCAGATGAAACCTTTGATTTGGACAACTTTAATTCAGAGTTTCTCCCATCAGATCTTGCTGAGTTTGCTGTTGATGTGGAAAGCTTACTTGGTTGCAAAGAAGAAGATGTAATAGATGGTTATGTTAATGGACTTGGAGCCAAAGGTGCAATGGTGGTGAAGGTTAAGGATGAAGAATTTGAGGCTGATACATCTTGTCATTTGGATTCAATTCTTGACATGGACAGTGAGGTCTTTGATTGGAACATTGACTCATCAGAATCACTGGCACAAAAAGAGGCAGTTCCATTGGTAGCAAGTGACAGTACTAAAGTGGTAACTAAAAAGGAGATTTTTTTGAGGCTTAATTATGAAGATGTTATCACTGCTTGGGCCAGCCAAGGTTCTCCATGGACAACAGGAAGCCCACCTAAGTTCAATTTTGATGACTGCTGGCCAGACTATTTGGGTTCAAGTGAAGCAGATGTTCAATGTTGTTATGGGGAAGGAAGGAGCTTAACTGGGCAACCAATAGGAGGTGTAGATGGGGGAAGAGAAGCAAGAGTTTCAAGGTACAGAGAGAAGAGAAGAACACGTTTGTTTGCAAAGAAGATAAGGTATGAAGTAAGGAAATTGAATGCAGAGAAAAGACCAAGAATGAAAGGTAGATTTGTCAAGAGAACATCCTTTGTTGGAGCCACTGCTTTGCAAGCCCAATTACCACTGACATCAAAGTGA 1281 0.4215 MIKEMKGASALGAKTARACDSCLRVRARWYCAADDAFLCHGCDNLVHSANQLASRHERVRLQTASSKVNYSLTTDKVNSQSQAWHSGFTRKARTPRHNKQQQQHKDIEVEAEGVVFNNTNTLPLVPELGSEEPLLDDETDQEQLLCRVPVFDPFDEGFCSIYNEVKDETMKNNDVVVAGGGGGGEEEEADETFDLDNFNSEFLPSDLAEFAVDVESLLGCKEEDVIDGYVNGLGAKGAMVVKVKDEEFEADTSCHLDSILDMDSEVFDWNIDSSESLAQKEAVPLVASDSTKVVTKKEIFLRLNYEDVITAWASQGSPWTTGSPPKFNFDDCWPDYLGSSEADVQCCYGEGRSLTGQPIGGVDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSFVGATALQAQLPLTSK. 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04937 426 MobiDBLite consensus disorder prediction 83 104 - -
Seca10g04937 426 SMART bboxneu5 14 61 IPR000315 GO:0008270
Seca10g04937 426 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 10 410 - -
Seca10g04937 426 ProSiteProfiles CCT domain profile. 366 408 IPR010402 GO:0005515
Seca10g04937 426 CDD Bbox1_BBX-like 18 61 - -
Seca10g04937 426 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Seca10g04937 426 Pfam CCT motif 366 408 IPR010402 GO:0005515
Seca10g04937 426 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04937 Seca-Chr10 113675871 113678562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04937 1 408 C2C2-CO-like Transcription Factor Family AT1G25440 43.280 3.90e-87 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Seca10g04937 zf-B_box 1.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04937 - - gmx:100802113 494.582