Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04934 ATGCGATTAAGCTGCAATGGATGCCGTGTTCTCCGCAGAGGGTGCAATCCTGAATGTCCAATTAGACCCTGCCTCCATTGGATCCATTCCCCTGACTCTCAGGCCAACGCCACCCTCTTCCTCGCCAAATTCTACGGCCGTGCTGGCCTCCTCAACCTCCTCACCGCCGCACCTCAACAACTCCAGCAAGCGGTTTTCAAATCCTTGCTCTACGAAGCTTGTGGCCGGATCGTGAACCCGGTTTTCGGTTCGACCGGATTGCTCTCGACCGGGAGCTGGCACTTGTGCGAAGCGGCCGTTAAAGCCGTTCTAAGCGGCGCGCCAATTCAGCAGGCTCCATCTTTTGACGGTGGTGTCAGCCTGCAGCTCCAGGCATGCGATATTCGCCACGTGGCGAAGAGTGTGGGGCAATCGTGCGGCTCTGATAGGGTGAGGCTCCATAGGGTTAAGTCTGGGACGAGGCAGTTCAAGCGGCGAGGGTTGAAACAGAAGCAAGAAGTGGTGGTGGCTTGTTGTGGAAGCAAGTTGGAAGGTTCGGTGAGTCATCATGAGTCTGGAGTGAGTGATAGCAGTTCCGTTGAGAGTGTGGAGGTAGCTCCTCCAGCTCATGATGATCAAGAATTGGAGCTGGAGTTGACTTTGACCTTGGGGTGTGGGGTCCAGTGA 666 0.5586 MRLSCNGCRVLRRGCNPECPIRPCLHWIHSPDSQANATLFLAKFYGRAGLLNLLTAAPQQLQQAVFKSLLYEACGRIVNPVFGSTGLLSTGSWHLCEAAVKAVLSGAPIQQAPSFDGGVSLQLQACDIRHVAKSVGQSCGSDRVRLHRVKSGTRQFKRRGLKQKQEVVVACCGSKLEGSVSHHESGVSDSSSVESVEVAPPAHDDQELELELTLTLGCGVQ. 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04934 221 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Seca10g04934 221 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 213 - -
Seca10g04934 221 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04934 Seca-Chr10 113649852 113651487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04934 1 214 AS2 family AT1G68510 49.576 5.10e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca10g04934 LOB 2.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04934 - - ccaj:109797229 244.588