Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04928 ATGGGGGAAAATCTACCTCCTGGCTTCAGGTTCCATCCTACAGATGAAGAGCTCATCACATGTTATCTTTCAAGGAAAGTGTCTGATACTGCTTTCACTTGTAAAGCTATAGCTGTTGTTGATCTCAACAAATCTGAACCTTGGGACCTCCCAGGTAAGGCCTCAATGGGGGAGAAGGAATGGTATTTCTTCAGCATGAGAGACCGGAAGTATCCAACTGGGCTTCGAACTAATCGAGCCACTGAATCAGGGTATTGGAAAACCACAGGGAAAGACAAGGAAATTTTTCGTGGTGGAGTTTTGGTAGGAATGAAGAAAACCCTAGTCTTCTATAAGGGTAGAGCTCCAAAGGGTGAAAAAAGCAATTGGGTCATGCACGAATATAGACTCGAAAACAAACATCACTTTAGAACTTCAAAGGATGAATGGGTGGTGTGCAGGGTTTTCCAAAAGAACTTAGCAACCAAAAAACCGCAACAAACATCGTCGTCCCAACCAGAGTCCCCATGTGACACAACCTCAATGGTTAATGAATTTGGAGATGTTGAGCTGCCTAATTTAAATAATATTGCAAATTCATCTGGAAGACTCATTAACATGTTTAATAATGATCTCAGTAATAACAATGTTAACACAAGTATGAACTTGACCATGAATTGGCCAAATATGGCGAGCGCAAACGGGGTTCCCTCTCTTACATCTTTCCCATGGCCTTCCGGGATGCTGCATCCAAATATTTCTATGAATTCTTTACTTCTCAAGGCCCTACAACTTAGGAACTATCAACAAAAAGAAGTTGTTGCAGTAGCTACAGATCATTTTGGATCATACATGTCTCAAGGAGTTTCCCATGTTGGAACTGATCTAAGTTCAAATCTCACTGCTTCTTCTTCAAAAGTTTTAGAATGCATGCCGCAACATCAACCGGAGCAACCATTCAATTTGGACTCCATCTGGTGA 960 0.4146 MGENLPPGFRFHPTDEELITCYLSRKVSDTAFTCKAIAVVDLNKSEPWDLPGKASMGEKEWYFFSMRDRKYPTGLRTNRATESGYWKTTGKDKEIFRGGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLENKHHFRTSKDEWVVCRVFQKNLATKKPQQTSSSQPESPCDTTSMVNEFGDVELPNLNNIANSSGRLINMFNNDLSNNNVNTSMNLTMNWPNMASANGVPSLTSFPWPSGMLHPNISMNSLLLKALQLRNYQQKEVVAVATDHFGSYMSQGVSHVGTDLSSNLTASSSKVLECMPQHQPEQPFNLDSIW. 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04928 319 Gene3D NAC domain 14 154 IPR036093 GO:0003677|GO:0006355
Seca10g04928 319 FunFam NAC domain-containing protein 100-like 14 155 - -
Seca10g04928 319 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Seca10g04928 319 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Seca10g04928 319 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 214 - -
Seca10g04928 319 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04928 Seca-Chr10 113494922 113500813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04928 1 319 NAC Transcription Factor Family AT3G18400 59.880 1.14e-116 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca10g04928 NAM 3.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04928 - - gmx:100787111 507.679