Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04921 ATGGCTGAATTCACAGAAAATTTGCAAAGCATTAAACCTTCTTTTTCTTTCTTAGATATTGATCCAAGCATGGAACTCCTAAATCAATTCATAGGGATAAACTCACATGTCATGGATAACTCAAACTTGAACATGCAGAACTTGATGCCTTTCTCCTGTGACAGCATCTTGGGCCCTCAAGAACCTGAGTTTCCAGGAAACTTGGAAGAAAATTTTCCTGGTCTTGTCCATCATGTCAATCACAATGCAGTTCCACTTTCCCTTCCAATTTTTCCATCAGAAAATGAAATCCATCAAGGTAAAAAGAGGAAAACAATGGATCTTCCAGAGACCAGTTCAGCAAACTCAACTCCTGCAGTTTCTGAGAGTGGAAGCAAGACAAAACATAGTTCTGGAAGAGGAAAGAGAGCAAAAAGCAATGTAACAGAAGAGGAGAAAGCAAAGGAAGTGGTTCATGTCAGAGCCAGAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAGAAATTAAAGTGCTTACAGAATATTGTTCCAGGATGCTACAAGGTCAAGACATTTTCCTTATAA 594 0.3906 MAEFTENLQSIKPSFSFLDIDPSMELLNQFIGINSHVMDNSNLNMQNLMPFSCDSILGPQEPEFPGNLEENFPGLVHHVNHNAVPLSLPIFPSENEIHQGKKRKTMDLPETSSANSTPAVSESGSKTKHSSGRGKRAKSNVTEEEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKVKTFSL. 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04921 197 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 197 IPR011598 GO:0046983
Seca10g04921 197 Pfam Helix-loop-helix DNA-binding domain 163 187 IPR011598 GO:0046983
Seca10g04921 197 Gene3D - 149 195 IPR036638 GO:0046983
Seca10g04921 197 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 95 192 IPR024097 GO:0006355
Seca10g04921 197 MobiDBLite consensus disorder prediction 109 127 - -
Seca10g04921 197 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 191 IPR036638 GO:0046983
Seca10g04921 197 MobiDBLite consensus disorder prediction 98 165 - -
Seca10g04921 197 MobiDBLite consensus disorder prediction 136 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04921 Seca-Chr10 113377945 113379855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04921 81 192 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 50.000 1.07e-25 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca10g04921 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04921 - - gmx:100806942 320.472