Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04920 ATGTGTACTCCTTTAAAGAGTGTCATCTCTTCTAGAGAAGATAATAATGAACTTAGAAGAGGACCTTGGACTCTTGAAGAGGATGATTTGCTCATCAAATACATTGCTAATCATGGAGAAGGAAGATGGAATTTGCTAGCTTTGCATTCAGGTAATCTAAGAATGATTTTGTACTTCTTTTTCTTTCTTATTACTTGCTTTATCTTTTCTGAGTCAGGATTAAGGAGAACAGGAAAGAGTTGCAGATTAAGATGGCTAAATTATCTAAAGCCAGATATTAAGAGAGGAAATTTAACCTCAGAAGAGCAACTTTTAATTTTTGAACTCCATTCAAAATGGGGCAACAGGTGGTCAAAAATTGCACAACACTTGCCAGGAAGAACAGATAATGAAATAAAAAACTATTGGAGAACAAGGATTCAGAAACAAGCAAGACATTTGAACATTGACACAAACAGAACAGGTTCTCTAGAAATTGTTAAACGTTTAAGGATGATAAGATGCCTTCAGAAAGCAAAAGAATCATCTCCTTCAGCTATGTCAATCCAAAACCAAGCAATTCCTTTGCCTCTTGATGATATTTCTCATTATGCACCAATTGAGACTATACCAACACAAATCCCTTGTCAGGGAGCTTGTGTGAATGAAGGAGGTCCTAATTTTTTGTACCAGCATGAGCAGAACTCAGACTCTGAGCACAACAATAGTTCATGCATATCCTCTTCAGAATCAGCAAATATGTCAAACAATAACATGACTCAACCTTTGGAATGTCAATTTCAGGGCTTAAATAACAGTGACTTTGGCATCTATGTATATGATGGTTACCAAATTAATAACAATGTTAATGAGACTGGTGCTTTCAACCAGACAATGATTGATGAGGATCTGGAATACACAATGGGTGATTACCAGATATCAGAAAGCAATTGGCTAGACAAGGAATTTTCATACATGAATGATCTGTGGCAAATTAGGAACATACAAAATTAA 993 0.3555 MCTPLKSVISSREDNNELRRGPWTLEEDDLLIKYIANHGEGRWNLLALHSGNLRMILYFFFFLITCFIFSESGLRRTGKSCRLRWLNYLKPDIKRGNLTSEEQLLIFELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRIQKQARHLNIDTNRTGSLEIVKRLRMIRCLQKAKESSPSAMSIQNQAIPLPLDDISHYAPIETIPTQIPCQGACVNEGGPNFLYQHEQNSDSEHNNSSCISSSESANMSNNNMTQPLECQFQGLNNSDFGIYVYDGYQINNNVNETGAFNQTMIDEDLEYTMGDYQISESNWLDKEFSYMNDLWQIRNIQN. 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04920 330 CDD SANT 99 138 IPR001005 -
Seca10g04920 330 ProSiteProfiles Myb-like domain profile. 15 89 IPR001005 -
Seca10g04920 330 FunFam MYB transcription factor 98 140 - -
Seca10g04920 330 SUPERFAMILY Homeodomain-like 18 136 IPR009057 -
Seca10g04920 330 Pfam Myb-like DNA-binding domain 95 138 IPR001005 -
Seca10g04920 330 Pfam Myb-like DNA-binding domain 20 89 IPR001005 -
Seca10g04920 330 Gene3D - 20 94 - -
Seca10g04920 330 SMART sant 19 91 IPR001005 -
Seca10g04920 330 SMART sant 94 142 IPR001005 -
Seca10g04920 330 CDD SANT 22 89 IPR001005 -
Seca10g04920 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 144 IPR017930 -
Seca10g04920 330 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 15 249 IPR044676 GO:0003700|GO:0006355|GO:0043565
Seca10g04920 330 Gene3D - 99 141 - -
Seca10g04920 330 ProSiteProfiles Myb-like domain profile. 90 140 IPR001005 -
Seca10g04920 330 MobiDBLite consensus disorder prediction 224 246 - -
Seca10g04920 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 89 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04920 Seca-Chr10 113363167 113364348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04920 15 283 MYB Transcription Factor Family AT1G68320 43.636 2.38e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca10g04920 Myb_DNA-binding 1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04920 K09422 - gmx:778042 355.91