Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04913 ATGTACACATCAAGGAAGAAAATTCACAAAGATAAGGATGCTGAGCCAACTGAGTTTGAGGAATCAGTTGGACAGGCATTGTTTGATCTAGAAAACACCAACCATGAGCTGAAAAGTGATCTGAAAGATTTATACATAAATTCAGCAGTCCAAATTGATGTTTCTGGCAACCGTAAGGCCGTGGTTATCCATGTCCCCTACAGATTAAGGAAAGGTTTCCGCAAGATTCATGTCAGGCTTGTTAGGGAGCTTGAGAAGAAATTTAGTGGCAAGGATGTAATCTTGGTTGCCACCCGGAGGATATTGAGGCCACCAAAGAAAGGTTCTGCTGTTCAGCGTCCCCGCACCCGTACACTCACTGCTGTGCATGAGGCAATGCTGGAGGATATTGTATTGCCTGCTGAGATTGTTGGGAAGCGTGTTAGGTATCGAGTTGATGGATCCAAGATTATGAAGGTGTTTTTGGACCCCAAGGAGCGAAACAATACTGAGTACAAGTTGGAGACTTTTGCTGCAGTATACAGGAAATTTTCGGGAAAAGATGTTGTGTTTGAGTATCCAATTACTGAGGCTTAG 576 0.4358 MYTSRKKIHKDKDAEPTEFEESVGQALFDLENTNHELKSDLKDLYINSAVQIDVSGNRKAVVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILVATRRILRPPKKGSAVQRPRTRTLTAVHEAMLEDIVLPAEIVGKRVRYRVDGSKIMKVFLDPKERNNTEYKLETFAAVYRKFSGKDVVFEYPITEA. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04913 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Seca10g04913 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
Seca10g04913 191 PANTHER 40S RIBOSOMAL PROTEIN S7 1 190 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04913 Seca-Chr10 113318056 113319638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04913 1 191 Cytoplasmic Ribosomal Protein Gene Family AT3G02560 79.581 7.37e-114 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04913 K02993 - gmx:100499757 367.466