Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04900 ATGAAATGCAATTGTTGTCTGGGGATAAAATCAACGTCTCACAAGTGCCTTGAGAAAGGTTTAGAAATGAACTGCCCAATTTGCTGTGATGACTTGTTCACATCAAGTGCAACTGTCAGAGCTCTACCTTGTGGGCATTACATGCATTCGTCTTGCTTTCAGGCATATACTTGTAGTCACTACACATGTCCAATCTGCAGCAAGTCACTGGGAGATATGGCAGTTTACTTTGGTATGCTTGATGCTTTGTTAGCTGCTGAGGAGCTTCCTGAAGAGTACAGGGACCGCTATCAGGACATACTCTGCCATGACTGTGATCGAAAGGGCACTTCACGCTTCCACTGGCTATATCACAAATGTGAATTTTGTGGCTCATACAATACCCGGGTGATCAAGAGTGAGGCAACAAATTCCAGCTGCCCTTAG 426 0.4484 MKCNCCLGIKSTSHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSSCFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQDILCHDCDRKGTSRFHWLYHKCEFCGSYNTRVIKSEATNSSCP. 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04900 141 ProSiteProfiles Zinc finger CTCHY-type profile. 1 24 IPR017921 -
Seca10g04900 141 Gene3D - 96 138 - -
Seca10g04900 141 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 137 - -
Seca10g04900 141 SUPERFAMILY RING/U-box 23 71 - -
Seca10g04900 141 Pfam Zinc-ribbon 72 129 IPR039512 -
Seca10g04900 141 SMART ring_2 25 66 IPR001841 -
Seca10g04900 141 Pfam Ring finger domain 24 66 IPR001841 -
Seca10g04900 141 FunFam Zinc finger protein-related isoform 1 20 69 - -
Seca10g04900 141 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 69 IPR013083 -
Seca10g04900 141 ProSiteProfiles Zinc finger RING-type profile. 25 67 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04900 Seca-Chr10 113221721 113224013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04900 1 140 C2H2 Transcription Factor Family AT3G18290 81.429 4.32e-77 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca10g04900 zinc_ribbon_6 4.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04900 K16276 - gmx:100776832 297.36