Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04891 ATGTGCATCGTATTTTGCTGTCGTGGATGTAAGTCATCAACATGGCGAGAAATATTTTGCTTAACAACAAAGAATGAAGTAGATGTTGAAGCATTCTTAAAAAATCATGGAGCTCTTGCACAGAAAAGATATAAATTTTCAGAAGTTAAGAAAATGACCAACTCTTTCAAAGTTCAACTAGGCCAAGGTGGATTTGGTGTTGTATACAAAGGAAAACTACTCGGTACTGGTTGTCCAATCGCTGTAAAGATATTGAATGCATCCAAAGGAAATGGTGAAGAATTTATTAATGAGGTTGCTAGCATAAGTAGAACTTCTCATGTTAATATTGTCACACTTCTTGGATTCTGTTTGGAAGGTCGCAAGAAAGCTCTCATATATGAATTTATGCCTAATGGTTCCCTTGACAAGTTTATTTACAAAATGGGACCAGAAACTATTGAATCTTTGAACTGGGAGAATTTGTATCAAATTGCCATTGGGATTGCTCGAGGGCTAGAATACTTACATCGGGGATGCAACACTCGAATTTTACATTTTGACATAAAACCACATAATATTCTTTTGGATGAGAATTTATATCCCAAAATATCAGATTTTGGGCTTGCAAAGCTATGTCACAAGAAAGAGAGCATCATTTCCATGTCAGATGCTAGAGGGACAATGGGATATGTAGCTCCAGAAGTGTGGAATAGACATTTTGGAGGAGTTTCACACAAGTCTGATGTTTATAGCTATGGAATGATGTTACTAGAAATGGTGGGAGGGAGGAAGAACATTAATGCTGAAGCCAGTCACACAAGTGAGATATATTTCCCTCATTGGGTATACAACAGGCTTGAGCTGGGTAGTGATTTGAGACCACATGAGGTGATGGCCAAAGAAGAAAATGATATTGCAAAGAGAATGACTGTAGTTGGTTTATGGTGCATTCAAACATTACCAAATGATAGACCAACAATCAGTAAAGTAATAGATATGCTGGAAGGTAGTATGAATTCCCTAGAAATGCCCCCAAAACCTCTTCATTCTTCTCCTACTAGATCGGTACCAGAATCTTCCACTTGA 1068 0.3745 MCIVFCCRGCKSSTWREIFCLTTKNEVDVEAFLKNHGALAQKRYKFSEVKKMTNSFKVQLGQGGFGVVYKGKLLGTGCPIAVKILNASKGNGEEFINEVASISRTSHVNIVTLLGFCLEGRKKALIYEFMPNGSLDKFIYKMGPETIESLNWENLYQIAIGIARGLEYLHRGCNTRILHFDIKPHNILLDENLYPKISDFGLAKLCHKKESIISMSDARGTMGYVAPEVWNRHFGGVSHKSDVYSYGMMLLEMVGGRKNINAEASHTSEIYFPHWVYNRLELGSDLRPHEVMAKEENDIAKRMTVVGLWCIQTLPNDRPTISKVIDMLEGSMNSLEMPPKPLHSSPTRSVPESST. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04891 355 ProSiteProfiles Protein kinase domain profile. 54 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04891 355 ProSitePatterns Protein kinases ATP-binding region signature. 60 83 IPR017441 GO:0005524
Seca10g04891 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Seca10g04891 355 Pfam Protein kinase domain 57 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04891 355 SMART serkin_6 54 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04891 355 PANTHER RUST RESISTANCE KINASE LR10-RELATED 26 345 IPR045874 GO:0004672
Seca10g04891 355 Gene3D Transferase(Phosphotransferase) domain 1 130 343 - -
Seca10g04891 355 FunFam PR5-like receptor kinase 130 340 - -
Seca10g04891 355 Gene3D Phosphorylase Kinase; domain 1 19 129 - -
Seca10g04891 355 SUPERFAMILY Protein kinase-like (PK-like) 42 329 IPR011009 -
Seca10g04891 355 MobiDBLite consensus disorder prediction 334 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04891 Seca-Chr10 113042904 113044070 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04891 23 353 Receptor kinase-like Gene Family AT5G38280 58.806 2.90e-132 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca10g04891 Pkinase 2.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04891 - - gmx:102665158 593.964