Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04889 ATGACCAACTCGTTCAAAGATAAACTAGGCCAAGGTGGTTTTGGTGCCGTGTACAAAGGAAAACTACTCAATGGTGGCCTAGTGGCTGTAAAGATATTGAAAGCATCTAAGGGAAATGGTGAAGAATTTATCAATGAGGTTGCTAGCATTAGTAGAACCTCTCATGTTAATATTGTCAACCTTCTTGGATTTTGTTTTGAAGGCCATAAGAAAGCTCTCATCTACGAATTTATTGATTTGAGACCTGATGGGGTGATAGTTACAAGAGAAAATGAGATTGCAAGGAGAATGGCCATTGTGGGTTTGTGGTGCATTCAAACATTTCCAAGTGATAGACCTACAATGACCAGAGTGATTGATATGTTGGAAGGGAGCATGAATTCCTTGGAAATGCCACCAAAACCTTTTCTTTCTTCTCCAACTAGATCAGTATCAGAATCTTCGACTTCTTGA 453 0.3929 MTNSFKDKLGQGGFGAVYKGKLLNGGLVAVKILKASKGNGEEFINEVASISRTSHVNIVNLLGFCFEGHKKALIYEFIDLRPDGVIVTRENEIARRMAIVGLWCIQTFPSDRPTMTRVIDMLEGSMNSLEMPPKPFLSSPTRSVSESSTS. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04889 150 ProSiteProfiles Protein kinase domain profile. 3 150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04889 150 SMART tyrkin_6 3 144 IPR020635 GO:0004713|GO:0006468
Seca10g04889 150 MobiDBLite consensus disorder prediction 132 150 - -
Seca10g04889 150 MobiDBLite consensus disorder prediction 130 150 - -
Seca10g04889 150 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Seca10g04889 150 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Seca10g04889 150 Pfam Protein tyrosine and serine/threonine kinase 5 79 IPR001245 GO:0004672|GO:0006468
Seca10g04889 150 SUPERFAMILY Protein kinase-like (PK-like) 5 80 IPR011009 -
Seca10g04889 150 PANTHER RUST RESISTANCE KINASE LR10-RELATED 89 142 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04889 Seca-Chr10 113026086 113027000 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04889 1 86 Receptor kinase-like Gene Family AT5G38280 70.115 1.12e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca10g04889 PK_Tyr_Ser-Thr 3.4e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04889 - - pmum:103338836 135.576