Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04886 ATGCCTCCTCTTCCTCTTCCTCTGCCACCTCCTTATTCCTTCATCAACGCATTTTTCTTTCTCACACTCTTATTCCCAACGATTCTCGCTAGTGATGCTGAAGGGTACACAGCTTGTGCACCTTTTAGTTGTGGGAATTTCAGTGACATTAGTTACCCCTTCTGGAGTAACAACCAACCAGATTATTGTGGGCACCCAAAGTTCAAGCTTGATTGCCAGCAAGGTAACGTGACTATTAACATCAAGTCCCAGAAGTTCCACATCGTTGATATAAATGAAAAATCTAAACTTTTGAAGATTGCAAGGTTGGATTTATTGGGTTTGGGTGAGAGTGGGAATGGGACTTGTCCTGAGAAAATCAATGTGAGTTTGGATTTGGATTTTTTCAGCTACACCTCGAATGATGATAACTACACTATATTATATGACTGCAGTTCTGATTCATACGGGTCTCCTGTGAATATCGATCCTTCTAAGCATTTTACTTGCTTCAAAGATGGTAATCCTCTTGATGCGTACATAGTGTTAAGTACAGATGTGGGGAATTTCAATGGTCTTGGGTGCATGAATAACATCACAGTTCCTGTCCAGAGTCCCACCTCGGATTCCTCCTCTGTTGTGAATGTTTTAGGTGAAGGATTTGAGGTTAAGTGGAGTGGTGTGAATGGAGATAAATGTGATAGTTGTATACAATCTGGTGGGAGATGTGGATACGATGCATCTATAAATGCATTTATGTGTCTCTGTCCTAATCAGCAATCTTTTGGTGGGATTTACACCTCTTTGCTCACAGGTGCTACCAGTGCAACGGTTGCAGTATTGTTGATATGTATCACTATTTTTTATTTTAGATCCAAGTCATCAACATGGCAGAGCAAATTTTGGTTGACAACAAAAAGTAACCAAGATATTGAAGTGTACTTGAAAAACCAAGGAGCCCTGCCTCTAAAAAGATATAAATTCTCAGATGTCAAAAAGATGACCAACTCCTTCAAAGTTAAACTAGGACAAGGTGGTTTTGGTGCTGTATACAAAGGAAATCTACTCACTGGTTCCCCTGTGGCTGTAAAGATATTGAATCCATCCAAAAGAAATGATGAAGAATTTATCAATGAGGTTGCTAGCATCAGTAAAACCTCTCATGTTAATGTTGTAACCCTTCTTGGATTTTGTTTGGAAGGCCAAAAGAAAGCTCTCATCTATGAGTTTATGCCTAATGGTTCCCTTGAAAAATTTATCCATAGAAAAGGACATGAAACTATTATGTCTTTGACTTGGGATAATTTATATCAAATTGCTGTAGGGATAGCTAGAGGGCTGGAGTACCTGCATAGGGGATGCAACACTAGGATTTTACATTTTGACATAAAACCACATAATATCCTTTTGGATGAGAATTTCTGTCCCAAGATATCAGATTTTGGGCTTGCAAAGCTCTGTCCCAGGACAGAGAGCATTATTTCAATTTCTGATGCTAGAGGAACAATGGGATATGTAGCCCCAGAAGTGTTGAATAAACATTTTGCAGGAGTTTCACACAAGTCTGATGTTTATAGCTATGGAATGATGCTGCTAGAAATGGTGGGAGGGAGGAAGAACATTAATGCTGAAGCTAGTCACACTAGTGAGATATACTTTCCACATTGGGTGTACAAGAGGCTTGAGCAAGGTAGTGAATTGAGACCAGATGAGGTGATGATCACAGAAGAAAATGAGATTGCAAAGAGAATGACCATTGTGGGTTTGTGGTGCATTCAAACGTTTCCAAATGATAGACCTACAATGAGTAGAGTGATTGATATGTTGGAAGGCAACATGAATTCCCTTGAAGTACCTCCAAAACCTTTGCTTTCTTCTCCTACTAGATCAGTACCAGAATCTTCCACTTCTTGA 1893 0.3951 MPPLPLPLPPPYSFINAFFFLTLLFPTILASDAEGYTACAPFSCGNFSDISYPFWSNNQPDYCGHPKFKLDCQQGNVTINIKSQKFHIVDINEKSKLLKIARLDLLGLGESGNGTCPEKINVSLDLDFFSYTSNDDNYTILYDCSSDSYGSPVNIDPSKHFTCFKDGNPLDAYIVLSTDVGNFNGLGCMNNITVPVQSPTSDSSSVVNVLGEGFEVKWSGVNGDKCDSCIQSGGRCGYDASINAFMCLCPNQQSFGGIYTSLLTGATSATVAVLLICITIFYFRSKSSTWQSKFWLTTKSNQDIEVYLKNQGALPLKRYKFSDVKKMTNSFKVKLGQGGFGAVYKGNLLTGSPVAVKILNPSKRNDEEFINEVASISKTSHVNVVTLLGFCLEGQKKALIYEFMPNGSLEKFIHRKGHETIMSLTWDNLYQIAVGIARGLEYLHRGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPRTESIISISDARGTMGYVAPEVLNKHFAGVSHKSDVYSYGMMLLEMVGGRKNINAEASHTSEIYFPHWVYKRLEQGSELRPDEVMITEENEIAKRMTIVGLWCIQTFPNDRPTMSRVIDMLEGNMNSLEVPPKPLLSSPTRSVPESSTS. 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04886 630 Gene3D Transferase(Phosphotransferase) domain 1 404 616 - -
Seca10g04886 630 Pfam Protein kinase domain 332 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04886 630 FunFam PR5-like receptor kinase 404 614 - -
Seca10g04886 630 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
Seca10g04886 630 Gene3D Phosphorylase Kinase; domain 1 290 403 - -
Seca10g04886 630 ProSiteProfiles Protein kinase domain profile. 329 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04886 630 Pfam Wall-associated receptor kinase C-terminal 187 251 IPR032872 -
Seca10g04886 630 SUPERFAMILY Protein kinase-like (PK-like) 312 603 IPR011009 -
Seca10g04886 630 SMART serkin_6 329 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04886 630 MobiDBLite consensus disorder prediction 610 630 - -
Seca10g04886 630 PANTHER RUST RESISTANCE KINASE LR10-RELATED 301 620 IPR045874 GO:0004672
Seca10g04886 630 CDD STKc_IRAK 335 604 - -
Seca10g04886 630 Pfam Wall-associated receptor kinase galacturonan-binding 39 101 IPR025287 GO:0030247
Seca10g04886 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Seca10g04886 630 FunFam serine/threonine-protein kinase PBS1-like 297 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04886 Seca-Chr10 112866734 112870360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04886 20 629 Receptor kinase-like Gene Family AT5G38260 40.254 1.11e-158 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca10g04886 Pkinase 3.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04886 - - gmx:102665158 843.573