Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04884 ATGAGGTTGCTAGTATCAGATTTTGTTTGGAAGGTCGCAAGAAAGCTCTCATCTATGAGTTCATGCCCAATGGTTCCCTTGACAAGTTTATTTATAAAAAAAGGGCCTGAAACCATTGCATCTTTGAGTTGGGATAATTTGTATGAAATCTCAATTGGGATAGCTCGTGGGTTAGAGTACCTACATAAAGGGTGCAACACTAGAATTTTACATTTTGACATAAAACCACATAATATTCTCTTGGATGAGAATTTCTGCCCCAAGATATCAGATTTTGGGCTTGCAAAGCTTTGTCCTGGGAAAAAGAGCATTATTTCCATGTCAGATGCTAGGGGGACAATGGGGTATGTAGCTCCAGAAGTGTGGAATAGAAATTTTGGGGGAGTTTCACATAAGTCTGATGTTTATAGCTATGGAATGATGTTGCTAGAAATGGTTGGAGGGAGAAAGAACATTAATGCTGAAGCCAATCATACAAGTGAGATATACTTCCTGATCGTAGCCGAGATCTAA 513 0.3899 MRLLVSDFVWKVARKLSSMSSCPMVPLTSLFIKKGPETIASLSWDNLYEISIGIARGLEYLHKGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPGKKSIISMSDARGTMGYVAPEVWNRNFGGVSHKSDVYSYGMMLLEMVGGRKNINAEANHTSEIYFLIVAEI. 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04884 170 SMART serkin_6 10 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04884 170 SUPERFAMILY Protein kinase-like (PK-like) 19 166 IPR011009 -
Seca10g04884 170 ProSiteProfiles Protein kinase domain profile. 1 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04884 170 PANTHER RUST RESISTANCE KINASE LR10-RELATED 39 165 IPR045874 GO:0004672
Seca10g04884 170 Pfam Protein kinase domain 41 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04884 170 FunFam Os07g0541700 protein 26 113 - -
Seca10g04884 170 Gene3D Transferase(Phosphotransferase) domain 1 6 169 - -
Seca10g04884 170 ProSitePatterns Serine/Threonine protein kinases active-site signature. 69 81 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04884 Seca-Chr10 112842941 112843489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04884 42 164 Receptor kinase-like Gene Family AT4G18250 63.200 3.18e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca10g04884 Pkinase 1.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04884 - - lja:Lj2g3v0716040.1 259.61