Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04882 ATGGATGAGCTGCATATCCATATTGATATGTCCATGCTCCTTACAAACATAGTGACTGTCTCTTTCTTGTTATTAACCACTTTACCACAATTCCATTGTCAACCACCGCCACCGGGTTACAATTATTCGTTTTGTAAGGAGGAGTCATACATGTACAACTGTGGAAAACTGTACAACATCTCGTATCCTTTCTGGGGACAGAACCGACCCTCTTACTGTGGCGGCGGTGACCCATTCTACCTCAACTGCCACCAGCAGGGTGATGATATTGATACTACTACTACTACAATTCAAATTGGCTCACAAAATTTCACAGTGCTGGGGATTAACACCACCAATTACAGCATGAGAATAGTGCGAACCGACCTTGTTAACGGTGTTTGTTCTCCGCAATTCGGAGATACTTATTGGAGTCCCACTCTGTTCAACTATCCCGATTCTGTTTACAACATCACCATATCCTACAATTGTTCCCAATCCCAAGTTGATTCCGCTTTTCCATACAACTTCACGTGCGGACATCAGATCAATGTTACCTATCATTTAGATAATTGGGGAGAAATTCCACCACCAGCATGCGAGCGACATGTCCGAGTACCAGTTGACGCTCTTCTGGATCATGCTCGTGGTGGATTAGATGGTCTGGAAGAAGTTCTTGAGAAGGGATTTGAAGTGAAGTATATTGTTGCTCCAGAATGCGTGAGTTGCCTCGGAAGTGAAGGGAAATGCTTCACCATTGATTTTCAGAAAAGTATATCTTCTTGCTATTATTGCCCAGATGGATCTCACTGTTCCGATACTGGTAAAAAAAACAAATGGAATTGGGAGAGGAAACTCGCTATAGGTGTTGCTTCTGCTGTGTTAGGAGCACTTGTAGTGATTGCTGCCTTGTTTTTCTATAGGCGCCGAAAGAATAATTATTCAATATCATATATGCAATCTCGGAGCCTCTCTTCTGATCCATCTTCAAAAGACCCTGAGAAGGGAAGTCAACACTTTGGAGTTGGAGTGCACCTCTTCACTTATACTGAACTTGAAGTTGCCACAAACTACTTTGACCCATCTAAAGAACTAGGAGAAGGGGGCTTTGGGACAGTGTATTATGGCAAACTGCGGGATGGCCGAGGTGTTGCAGTGAAGAGGTTGTATGAGAACAATTATAGGAGAGTTGAGCAATTCATGAATGAAGTTGGGATCCTAACTCGGTTAGTCCATCCAAATCTTGTTTCACTATATGGATGCACTTCTCGCCACAGCCGTGAACTTCTGCTTGTATATGAGTACGTTCCTAATGGAACAGTTGCTGATCATCTTCATGGTAAACAAGCCAAACCTGGAAAACTCCCTTGGCATATTAGAATGAACATTGCTGTGGAGACAGCAAGTGCATTGAAATATCTGCATATCTCTGACATCATCCACAGAGATATAAAAACCAACAACATTCTTCTTGATAATCACTTTCGTGTCAAAGTAGCAGATTTTGGACTTTCACGTCTTTTTCCAGACCATGTTACTCATGTTTCAACAGCTCCACAAGGGACTCCAGGTTATGTGGATCCAGAGTACCATGAGTGCTACCAGCTTACTAGCAAAAGTGATGTCTATAGCTTTGGAGTGGTGCTGATTGAGCTGATATCTTCCTTGCCTGCTGTTGATATCACAAGGCATAGGCATGAAATCAATTTGGCCAACATGGCCATTAACAAGATTCAGAATCAAACACTGCATGAGCTTGTGGACAAATCCCTTGGGTTTGACTCAGATTTCAAGGTAAGGAAAATGATAAATGCTGTGGCTGAGTTAGCATTTCAGTGCTTGCAGAGTTCCAAAGATATGAGACCTTCTATGGATGAAGTGTTGGATACTCTCAAGGATATACAGAGTGATGGCAAATATAAAAGCCAACCTGAGGTAATGGATATCACAAGCTCAGCTGATGATGTTGTGTTGCTGAAGGATGACCCACCTCCACCATCACCGGATTCAAATGTTGTAAGCAAGTCTACAACACCAAATGCTAGCGGATAA 2031 0.4254 MDELHIHIDMSMLLTNIVTVSFLLLTTLPQFHCQPPPPGYNYSFCKEESYMYNCGKLYNISYPFWGQNRPSYCGGGDPFYLNCHQQGDDIDTTTTTIQIGSQNFTVLGINTTNYSMRIVRTDLVNGVCSPQFGDTYWSPTLFNYPDSVYNITISYNCSQSQVDSAFPYNFTCGHQINVTYHLDNWGEIPPPACERHVRVPVDALLDHARGGLDGLEEVLEKGFEVKYIVAPECVSCLGSEGKCFTIDFQKSISSCYYCPDGSHCSDTGKKNKWNWERKLAIGVASAVLGALVVIAALFFYRRRKNNYSISYMQSRSLSSDPSSKDPEKGSQHFGVGVHLFTYTELEVATNYFDPSKELGEGGFGTVYYGKLRDGRGVAVKRLYENNYRRVEQFMNEVGILTRLVHPNLVSLYGCTSRHSRELLLVYEYVPNGTVADHLHGKQAKPGKLPWHIRMNIAVETASALKYLHISDIIHRDIKTNNILLDNHFRVKVADFGLSRLFPDHVTHVSTAPQGTPGYVDPEYHECYQLTSKSDVYSFGVVLIELISSLPAVDITRHRHEINLANMAINKIQNQTLHELVDKSLGFDSDFKVRKMINAVAELAFQCLQSSKDMRPSMDEVLDTLKDIQSDGKYKSQPEVMDITSSADDVVLLKDDPPPPSPDSNVVSKSTTPNASG. 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04882 676 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 43 672 IPR044652 GO:0004672
Seca10g04882 676 SMART serkin_6 352 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04882 676 SUPERFAMILY Protein kinase-like (PK-like) 335 650 IPR011009 -
Seca10g04882 676 FunFam Wall-associated receptor kinase-like 20 429 637 - -
Seca10g04882 676 Gene3D Phosphorylase Kinase; domain 1 323 428 - -
Seca10g04882 676 MobiDBLite consensus disorder prediction 646 676 - -
Seca10g04882 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Seca10g04882 676 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Seca10g04882 676 Pfam Wall-associated receptor kinase C-terminal 189 260 IPR032872 -
Seca10g04882 676 Pfam Protein kinase domain 355 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04882 676 ProSiteProfiles Protein kinase domain profile. 352 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04882 676 Pfam Wall-associated receptor kinase galacturonan-binding 47 120 IPR025287 GO:0030247
Seca10g04882 676 Gene3D Transferase(Phosphotransferase) domain 1 429 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04882 Seca-Chr10 112824553 112831199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04882 45 676 Receptor kinase-like Gene Family AT1G25390 44.172 2.53e-157 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Seca10g04882 Pkinase 2.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04882 - - aip:107644271 691.419