Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04864 ATGCCAATCTTCTCGTTTTTATCTCACTGTTTCGTCCCTAATGAAAGTAGAAACCACCCTTCCCTACCAATTGGTTCTGAGGTGAAGGGTAGTCAGTTGATGCCTGTGAATTCTGAGGATCCAAGCAGATGGAGTGAACCAGTGCCTGTGATCTCTGAACTACCAAGTAGTCATGGTCAATCAATGTCGGTTGATTCTGAGGTACTGAACAGTCAGAGCTACATAAGTAAGATCTTCAAGTATTCTGAACTTGAAGAAGCCACCAACAATTTTGACCCTAGCAAAATACTTGGAAGTGGAGGCTATGGGACAGTATACTCTGGAATACTTAAAGATGGACGCCGTGTTGCAATAAAGCGCTTGCATGAAGACAAGTTCAAGATCATAAGGTTCCATGATAAGAAGCTTGAGGGGGAGAGACACAGAGTATTCATGAATGAAGTTTCAATGTTAACTTGCTTGAGGCATGAAAATCTTGTCCAACTGTATGGCTGCACCTCACCTCAGAGCCGCGAACTGCTTCTTGTGCAAGAATACATTCCCAATGGAACTGTTGCTAGTCATCTTCGTGGTAAAAAAAGAACCTTCCCATGGTCTACTCGACTAAACATTGCCATACAAACTGCATGTGCATTAGCTTATCTTCATGCTTCCAACATTATCCACCGCGATGTGAAAACCAGTAATATTCTGCTTGATAGAAGTTTGAATGCCAAAGTTGCAGACTTTGGATTGTCACGCCTTATCCCACATGGTGTTACTCATATTACTACTGATCCTGCTGGGACTCCAGGTTATATTGATCCAGAATATTATGAACATTGTCATCTTTCTGATAAGAGTGATGTATATAGTTTTGGGGTGATATTGGTTGAGCTGATTTCATCTTTGCCTGCATTTAGTGAGAATGATAAACAACAGCCTTTTCTTTCAGACTTTGCCATGGATAAAATCATTTGTGGACAAGTCCAGAAGCTTGTTGACCCACATCTTGGATTTGAATCAAACAGCTGGACAAGTGAAACAATTACTGCAGTGTCTGAGTTGGCATTTAGCTGTCTACAACCTCAAAGAGACATGAGACCTTCCATGGGAGAGGTGTTAAATACTCTTGAGAGCATTAGAAGTGGAAGCTCTCAAAATGATCTTGCATGGGGTTCAAATAGTTGTTACAATGCCACCAAAGTTCATGTTGTGTCTCGCTTGCCTGATGATTATTTTGAGAAGAAATAG 1233 0.4112 MPIFSFLSHCFVPNESRNHPSLPIGSEVKGSQLMPVNSEDPSRWSEPVPVISELPSSHGQSMSVDSEVLNSQSYISKIFKYSELEEATNNFDPSKILGSGGYGTVYSGILKDGRRVAIKRLHEDKFKIIRFHDKKLEGERHRVFMNEVSMLTCLRHENLVQLYGCTSPQSRELLLVQEYIPNGTVASHLRGKKRTFPWSTRLNIAIQTACALAYLHASNIIHRDVKTSNILLDRSLNAKVADFGLSRLIPHGVTHITTDPAGTPGYIDPEYYEHCHLSDKSDVYSFGVILVELISSLPAFSENDKQQPFLSDFAMDKIICGQVQKLVDPHLGFESNSWTSETITAVSELAFSCLQPQRDMRPSMGEVLNTLESIRSGSSQNDLAWGSNSCYNATKVHVVSRLPDDYFEKK. 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04864 410 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 53 387 IPR044652 GO:0004672
Seca10g04864 410 SUPERFAMILY Protein kinase-like (PK-like) 69 372 IPR011009 -
Seca10g04864 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Seca10g04864 410 Gene3D Phosphorylase Kinase; domain 1 62 179 - -
Seca10g04864 410 Pfam Protein kinase domain 94 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04864 410 ProSiteProfiles Protein kinase domain profile. 91 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04864 410 ProSitePatterns Protein kinases ATP-binding region signature. 97 119 IPR017441 GO:0005524
Seca10g04864 410 FunFam Lectin-domain containing receptor kinase A4.3 180 383 - -
Seca10g04864 410 SMART serkin_6 91 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04864 410 Gene3D Transferase(Phosphotransferase) domain 1 180 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04864 Seca-Chr10 112066822 112069573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04864 59 376 Receptor kinase-like Gene Family AT1G25390 53.211 2.03e-106 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Seca10g04864 Pkinase 3.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04864 - - tpra:123887372 605.905