Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04855 ATGGTGGGGAATGTTGAAAACATAACAATTGTCGAAAATAATGCTGCTGATGCCATAGTGTCTTGTGCTTCTATGCCAGATAATGGAAGTTTTGTTCTTTTAGATAAGGACAATAAGCAGAATGATAGCAATTTGGTTCTTTACTATTCACCACCACATTCTGAAACACATGAACCTTACTGGGCTACTGGAACTCTAAAAACTGAATCAGTCTGGACGCATCTGCACTTCAGGTTGGAAAATATCCTGAAGATATTTTCCTTGTCTTCACAAAGGACATGGGAAGTGTTATCTGTGGTTTCAACAGTTACTGTGTTACCATCAATGGGAAGCCTAATTGTGAATGCCCTGAGCTGCTACATAGAGGGGTGGGATCAGAATAAAGATCTAGTAGATTTCAACGAGTATCCAAATGTGAACTGGCCTCTCAATGATTATGATCAGCTGATGGCCTTTTTCTTGTTCTACCACAGGAAGCATTTGAATCCAGCTGCAACAACAACAACAAGGTGTTTTACATACAAGGAGCTTGAAGAAGCAACTACAGGCTTCAAACAAATATTGGGTAGAGGTGCTTTTGGGACAGTTTATAAAGGGGTAATAACATCAGATACCAGCAGATTTGTTGCTGTCAAAAAGCTAGATAAGGTTTTGCAAGAAGGTGAAAAGGAATTCAAAACAGAAGTGAGTGTGATTGGCCAAACCCACCACAGGAATTTGGTTTGTTTACTTGGTTACTGTGATGAAGGGGAGCATCAACTTCTGGTCTCTGAGTATATGAGTAATGGCTCACTAGCAAGCTTTCTCTTTGGGATTTCAAGGCCTCATTGGAATCAAAGAGTGCAAATTGCTTTAGGAATTGAAAGAGGTCTCACATATTTGCATGAAGAGTGCAGCACTCAGATCATTCATTGTGACATAAAGCCTCTGAATATACTCCTTGATGAGTTATTCACTCCAAGAATTTCTGATTTTGGGTTAGCAAAGCTTTTGTTGGCTGAGCAAACTAGAGCTGCTAAGACAGGTTTGAGAGGGACAATTGGTTACTTTGCACCTGAATGGTTTAGGAAAGCTTCAATCACAACTAAAGTAGATGTTTACAGTTTTGGAGTGTTGCTGCTAGAGATCATATGCTGCAAATCAAGTGTTGCTTTTCATTGGCAAATGAAGAAGAGGCACTCCTTGATTGGGCATATCATTGTTATTGCCAAGGAAAAGTAG 1221 0.3972 MVGNVENITIVENNAADAIVSCASMPDNGSFVLLDKDNKQNDSNLVLYYSPPHSETHEPYWATGTLKTESVWTHLHFRLENILKIFSLSSQRTWEVLSVVSTVTVLPSMGSLIVNALSCYIEGWDQNKDLVDFNEYPNVNWPLNDYDQLMAFFLFYHRKHLNPAATTTTRCFTYKELEEATTGFKQILGRGAFGTVYKGVITSDTSRFVAVKKLDKVLQEGEKEFKTEVSVIGQTHHRNLVCLLGYCDEGEHQLLVSEYMSNGSLASFLFGISRPHWNQRVQIALGIERGLTYLHEECSTQIIHCDIKPLNILLDELFTPRISDFGLAKLLLAEQTRAAKTGLRGTIGYFAPEWFRKASITTKVDVYSFGVLLLEIICCKSSVAFHWQMKKRHSLIGHIIVIAKEK. 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04855 406 FunFam S-receptor-like serine/threonine-protein kinase 156 259 - -
Seca10g04855 406 FunFam Os07g0541700 protein 260 346 - -
Seca10g04855 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 302 314 IPR008271 GO:0004672|GO:0006468
Seca10g04855 406 Gene3D Transferase(Phosphotransferase) domain 1 260 404 - -
Seca10g04855 406 ProSitePatterns Protein kinases ATP-binding region signature. 188 213 IPR017441 GO:0005524
Seca10g04855 406 Pfam Protein kinase domain 185 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04855 406 SUPERFAMILY Protein kinase-like (PK-like) 163 383 IPR011009 -
Seca10g04855 406 SMART serkin_6 182 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04855 406 ProSiteProfiles Protein kinase domain profile. 182 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g04855 406 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 108 388 - -
Seca10g04855 406 Gene3D Phosphorylase Kinase; domain 1 156 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04855 Seca-Chr10 111926721 111928921 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g04855 150 386 Receptor kinase-like Gene Family AT4G23220 42.276 4.71e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca10g04855 Pkinase 1.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04855 - - gmx:100796323 422.55